Variant report

Variant	rs7177495
Chromosome Location	chr15:41947937-41947938
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41947183..41950563-chr15:41951272..41954029,4	MCF-7	breast:
2	chr15:41945176..41947724-chr15:41947900..41950145,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174197	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1043627	0.85[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs1106934	0.93[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11070346	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11070349	0.95[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs11547012	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs11853665	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11858843	0.89[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs1197659	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1197662	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs1197668	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs1197687	0.85[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs1197688	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs1197689	0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs1197690	0.85[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs1197770	0.81[EUR][1000 genomes]
rs1197773	0.86[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs1206842	0.90[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs1209333	0.86[ASN][1000 genomes]
rs12439771	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12440605	0.90[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs12591253	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12591285	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12595271	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12901742	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16971915	0.93[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs1726915	0.86[ASN][1000 genomes]
rs1918312	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1918313	0.93[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2077361	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2077543	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs2241523	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs2412640	0.90[CHB][hapmap];0.87[JPT][hapmap]
rs2577949	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28671571	0.81[ASN][1000 genomes]
rs2925340	0.84[ASN][1000 genomes]
rs34769385	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35033220	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35359048	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3816533	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs4072386	0.93[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs4923906	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4923907	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4923913	0.84[ASN][1000 genomes]
rs4923917	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs4924573	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57814590	0.87[ASN][1000 genomes]
rs7166139	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs7168386	0.81[EUR][1000 genomes]
rs7168489	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7173779	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7174099	0.84[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs7175346	0.87[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs8024907	0.81[EUR][1000 genomes]
rs8025614	0.82[JPT][hapmap]
rs9806709	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052902	chr15:41869277-41951572	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41925000-41952200	Weak transcription	Ovary	ovary
2	chr15:41927000-41951800	Weak transcription	Hela-S3	cervix
3	chr15:41941000-41951400	Weak transcription	Fetal Kidney	kidney
4	chr15:41941200-41952000	Weak transcription	HSMM	muscle
5	chr15:41941600-41952000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:41941600-41952000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:41943400-41952000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:41944800-41948400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:41946400-41951400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr15:41946400-41952000	Weak transcription	Spleen	Spleen
11	chr15:41946800-41948400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr15:41947200-41948600	Enhancers	Osteobl	bone
13	chr15:41947200-41951800	Weak transcription	Fetal Intestine Small	intestine
14	chr15:41947400-41948800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr15:41947600-41948000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:41947600-41949000	Enhancers	NH-A	brain
17	chr15:41947600-41949200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr15:41947800-41948400	Enhancers	A549	lung
19	chr15:41947800-41949200	Enhancers	Dnd41	blood

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