Variant report

Variant	rs7168489
Chromosome Location	chr15:41973213-41973214
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:41971306..41973909-chr15:41977084..41979725,2	K562	blood:
2	chr15:41973132..41976112-chr15:41981516..41983125,2	K562	blood:
3	chr15:41954590..41956853-chr15:41972603..41974738,2	K562	blood:
4	chr15:41959755..41961504-chr15:41972745..41974488,2	K562	blood:
5	chr15:41952625..41954330-chr15:41973061..41975209,2	K562	blood:
6	chr15:41953002..41954735-chr15:41971952..41974245,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174197	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1043627	0.83[ASN][1000 genomes]
rs1106934	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11070346	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11070349	0.83[ASN][1000 genomes]
rs11853665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11858843	0.83[ASN][1000 genomes]
rs1197659	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1197687	0.82[ASN][1000 genomes]
rs1197688	0.82[ASN][1000 genomes]
rs1197689	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1197690	0.86[ASN][1000 genomes]
rs1197770	0.86[EUR][1000 genomes]
rs1197773	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1206842	0.83[ASN][1000 genomes]
rs1209333	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12439771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12440605	0.83[ASN][1000 genomes]
rs12591253	0.81[ASN][1000 genomes]
rs12591285	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12595271	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12901742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1726915	0.86[ASN][1000 genomes]
rs1918312	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1918313	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2077361	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577949	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28671571	0.81[ASN][1000 genomes]
rs2925340	0.84[ASN][1000 genomes]
rs34769385	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35033220	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35359048	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4923906	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4923907	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4923913	0.84[ASN][1000 genomes]
rs4924573	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57814590	0.87[ASN][1000 genomes]
rs7173779	0.86[ASN][1000 genomes]
rs7174099	0.81[ASN][1000 genomes]
rs7175346	0.81[ASN][1000 genomes]
rs7177495	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9806709	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049514	chr15:41958482-42081210	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41954400-41978600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:41954400-41982800	Weak transcription	Small Intestine	intestine
3	chr15:41954600-41976200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr15:41954600-41983800	Weak transcription	Thymus	Thymus
5	chr15:41954600-42001000	Weak transcription	Colonic Mucosa	Colon
6	chr15:41954800-41976200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr15:41954800-41980800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr15:41955000-41988200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr15:41958400-41978400	Weak transcription	Pancreas	Pancrea
10	chr15:41958800-41973400	Weak transcription	HMEC	breast
11	chr15:41959400-41988600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr15:41959400-41989000	Weak transcription	NHDF-Ad	bronchial
13	chr15:41959600-41981000	Weak transcription	Osteobl	bone
14	chr15:41961600-41975400	Weak transcription	Aorta	Aorta
15	chr15:41961800-41990600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr15:41962000-41980200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr15:41962000-41983800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr15:41962000-41988400	Weak transcription	Adipose Nuclei	Adipose
19	chr15:41962000-41990800	Weak transcription	NH-A	brain
20	chr15:41962000-41991200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr15:41962000-42001400	Weak transcription	Gastric	stomach
22	chr15:41962200-41974800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr15:41962200-41984400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:41962200-42001000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:41962600-41981400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr15:41962600-41981800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr15:41962600-41983400	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr15:41962600-41983600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr15:41962600-41984000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr15:41962600-41988400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr15:41963400-41988400	Weak transcription	Placenta	Placenta
32	chr15:41963600-41987800	Weak transcription	Primary B cells from cord blood	blood
33	chr15:41964400-41973600	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr15:41964400-41975800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr15:41964600-41981000	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr15:41964600-41982200	Weak transcription	Ovary	ovary
37	chr15:41964800-41974800	Weak transcription	Primary T cells from cord blood	blood
38	chr15:41964800-41983800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr15:41965000-41980600	Weak transcription	K562	blood
40	chr15:41965000-41982400	Weak transcription	Brain Anterior Caudate	brain
41	chr15:41966600-41984400	Weak transcription	Left Ventricle	heart
42	chr15:41966600-41988400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr15:41967600-41976400	Weak transcription	A549	lung
44	chr15:41967600-41976400	Weak transcription	HepG2	liver
45	chr15:41967600-41982600	Weak transcription	GM12878-XiMat	blood
46	chr15:41967800-41980600	Weak transcription	Dnd41	blood
47	chr15:41968200-41974800	Weak transcription	Primary B cells from peripheral blood	blood
48	chr15:41968400-41975400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr15:41968400-41982200	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr15:41968800-41988600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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