Variant report

Variant	rs4923906
Chromosome Location	chr15:41958321-41958322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr15:41958090-41958430	K562	blood:	n/a	n/a

Variant related genes	Relation type
MGA	TF binding region

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1043627	0.91[CEU][hapmap];0.81[ASN][1000 genomes]
rs1106934	1.00[CEU][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11070346	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11070349	0.82[ASN][1000 genomes]
rs11853665	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11858843	0.81[ASN][1000 genomes]
rs1197659	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1197687	0.91[CEU][hapmap];0.80[ASN][1000 genomes]
rs1197688	0.91[CEU][hapmap];0.81[ASN][1000 genomes]
rs1197689	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1197690	0.91[CEU][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs1197770	0.86[EUR][1000 genomes]
rs1197773	0.91[CEU][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1206842	0.81[CEU][hapmap];0.81[ASN][1000 genomes]
rs1209333	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12439771	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12440605	0.81[ASN][1000 genomes]
rs12591285	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12595271	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12901742	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16971915	1.00[CEU][hapmap]
rs1726915	0.84[ASN][1000 genomes]
rs1918312	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1918313	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2077361	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2577949	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2925340	0.83[ASN][1000 genomes]
rs34769385	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35033220	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35359048	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3816533	0.82[CEU][hapmap]
rs4072386	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4923907	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4923913	0.83[ASN][1000 genomes]
rs4924573	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57814590	0.86[ASN][1000 genomes]
rs7168489	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7173779	1.00[CEU][hapmap];0.84[ASN][1000 genomes]
rs7177495	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9806709	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41954200-41962600	Weak transcription	Spleen	Spleen
2	chr15:41954400-41961600	Weak transcription	Gastric	stomach
3	chr15:41954400-41964600	Weak transcription	Lung	lung
4	chr15:41954400-41970600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:41954400-41978600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:41954400-41982800	Weak transcription	Small Intestine	intestine
7	chr15:41954600-41958400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:41954600-41958400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr15:41954600-41958600	Weak transcription	NHLF	lung
10	chr15:41954600-41958800	Weak transcription	Colon Smooth Muscle	Colon
11	chr15:41954600-41960400	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr15:41954600-41961000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr15:41954600-41961000	Weak transcription	Fetal Thymus	thymus
14	chr15:41954600-41961200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:41954600-41961200	Weak transcription	Aorta	Aorta
16	chr15:41954600-41961200	Weak transcription	Fetal Muscle Leg	muscle
17	chr15:41954600-41961400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr15:41954600-41961400	Weak transcription	Ovary	ovary
19	chr15:41954600-41961600	Weak transcription	Esophagus	oesophagus
20	chr15:41954600-41961600	Weak transcription	Placenta	Placenta
21	chr15:41954600-41961600	Weak transcription	Right Atrium	heart
22	chr15:41954600-41961600	Weak transcription	Right Ventricle	heart
23	chr15:41954600-41961800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr15:41954600-41964000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr15:41954600-41964000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr15:41954600-41964200	Weak transcription	Fetal Stomach	stomach
27	chr15:41954600-41964800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr15:41954600-41965600	Weak transcription	Left Ventricle	heart
29	chr15:41954600-41976200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr15:41954600-41983800	Weak transcription	Thymus	Thymus
31	chr15:41954600-42001000	Weak transcription	Colonic Mucosa	Colon
32	chr15:41954800-41958400	Weak transcription	HSMM	muscle
33	chr15:41954800-41958400	Weak transcription	NHDF-Ad	bronchial
34	chr15:41954800-41958400	Weak transcription	NHEK	skin
35	chr15:41954800-41958400	Weak transcription	Osteobl	bone
36	chr15:41954800-41958600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr15:41954800-41958800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr15:41954800-41960000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr15:41954800-41961000	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr15:41954800-41961000	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr15:41954800-41961000	Weak transcription	Primary T cells from cord blood	blood
42	chr15:41954800-41961200	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr15:41954800-41961200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr15:41954800-41961200	Weak transcription	Primary B cells from peripheral blood	blood
45	chr15:41954800-41961200	Weak transcription	Primary hematopoietic stem cells	blood
46	chr15:41954800-41961200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr15:41954800-41961200	Weak transcription	Adipose Nuclei	Adipose
48	chr15:41954800-41961200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr15:41954800-41961200	Weak transcription	Fetal Intestine Large	intestine
50	chr15:41954800-41961400	Weak transcription	Primary monocytes fromperipheralblood	blood

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