Variant report

Variant	rs4072386
Chromosome Location	chr15:41896855-41896856
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:41853024..41855719-chr15:41894877..41896959,2	K562	blood:
2	chr15:41895978..41896965-chr15:42196438..42197404,2	MCF-7	breast:
3	chr15:41895685..41897550-chr15:41949575..41953592,3	K562	blood:
4	chr15:41894850..41897791-chr15:41952425..41954707,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174197	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1106934	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap]
rs11070349	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs11858843	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs1197659	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs1197773	0.93[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap]
rs12439488	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12439771	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs12591253	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12591285	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs12595271	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs12901742	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs16971915	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1918312	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1918313	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs2077361	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2577949	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs28896245	0.81[AMR][1000 genomes]
rs34405276	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4923906	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4923907	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4924573	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7168386	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7173431	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7173779	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7177495	0.93[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs8024907	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8026106	0.81[AMR][1000 genomes]
rs8038764	0.88[ASN][1000 genomes]
rs9788715	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9788733	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052902	chr15:41869277-41951572	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41895800-41897000	Enhancers	Dnd41	blood
2	chr15:41896000-41897000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr15:41896000-41897200	Enhancers	Placenta	Placenta
4	chr15:41896200-41897000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr15:41896200-41897000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr15:41896200-41897000	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr15:41896200-41897000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr15:41896200-41897000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr15:41896200-41897000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr15:41896200-41897000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
11	chr15:41896200-41897000	Flanking Active TSS	Colon Smooth Muscle	Colon
12	chr15:41896200-41897000	Enhancers	Left Ventricle	heart
13	chr15:41896200-41897000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr15:41896200-41897000	Flanking Active TSS	NH-A	brain
15	chr15:41896200-41897200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr15:41896200-41897200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:41896400-41897000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr15:41896400-41897000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
19	chr15:41896400-41897000	Enhancers	Fetal Stomach	stomach
20	chr15:41896400-41897000	Flanking Active TSS	Osteobl	bone
21	chr15:41896600-41897000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr15:41896600-41897000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:41896600-41897000	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr15:41896600-41897000	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr15:41896600-41897000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr15:41896600-41897000	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr15:41896600-41897000	Bivalent Enhancer	Primary B cells from cord blood	blood
28	chr15:41896600-41897000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr15:41896600-41897000	Active TSS	Right Atrium	heart
30	chr15:41896600-41897000	Bivalent Enhancer	HUVEC	blood vessel
31	chr15:41896600-41897200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr15:41896600-41897200	Enhancers	HepG2	liver
33	chr15:41896600-41897800	Weak transcription	Fetal Intestine Small	intestine
34	chr15:41896600-41899600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr15:41896800-41897000	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr15:41896800-41897000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr15:41896800-41897000	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr15:41896800-41897000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr15:41896800-41897000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr15:41896800-41897000	Enhancers	Brain Angular Gyrus	brain
41	chr15:41896800-41897000	Enhancers	Brain Cingulate Gyrus	brain
42	chr15:41896800-41897000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr15:41896800-41897000	Enhancers	Brain Substantia Nigra	brain
44	chr15:41896800-41897000	Enhancers	Fetal Heart	heart
45	chr15:41896800-41897000	Active TSS	Stomach Smooth Muscle	stomach
46	chr15:41896800-41897000	Flanking Active TSS	A549	lung
47	chr15:41896800-41897000	Enhancers	Hela-S3	cervix
48	chr15:41896800-41897000	Enhancers	HMEC	breast
49	chr15:41896800-41897000	Enhancers	HSMMtube	muscle
50	chr15:41896800-41897000	Enhancers	K562	blood

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