Variant report

Variant	rs8038764
Chromosome Location	chr15:41907905-41907906
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12438252	0.83[EUR][1000 genomes]
rs12591253	0.89[ASN][1000 genomes]
rs16971915	0.90[ASN][1000 genomes]
rs1819454	0.81[EUR][1000 genomes]
rs34405276	0.93[ASN][1000 genomes]
rs4072386	0.88[ASN][1000 genomes]
rs7163022	0.81[EUR][1000 genomes]
rs7168386	0.88[ASN][1000 genomes]
rs7173431	0.86[ASN][1000 genomes]
rs7173779	0.81[ASN][1000 genomes]
rs8024907	0.85[ASN][1000 genomes]
rs9788715	0.90[ASN][1000 genomes]
rs9788733	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052902	chr15:41869277-41951572	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8038764	MGA	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41907600-41909000	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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