Variant report

Variant	rs7199644
Chromosome Location	chr16:72685230-72685231
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:72677208..72679563-chr16:72684004..72686829,2	MCF-7	breast:
2	chr16:72684598..72687007-chr16:72696642..72699008,2	K562	blood:
3	chr16:72684598..72691322-chr16:72693103..72699384,8	K562	blood:

Variant related genes	Relation type
ENSG00000259768	Chromatin interaction
ENSG00000261008	Chromatin interaction

Extended variants
information (count: 130 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs1035983	0.88[ASN][1000 genomes]
rs1035984	0.87[ASN][1000 genomes]
rs10400973	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10492826	0.81[ASN][1000 genomes]
rs11075930	0.82[ASN][1000 genomes]
rs11075934	0.81[ASN][1000 genomes]
rs11075938	0.91[ASN][1000 genomes]
rs11075940	0.91[ASN][1000 genomes]
rs11861672	0.82[AFR][1000 genomes]
rs12051305	0.81[ASN][1000 genomes]
rs12051436	0.85[ASN][1000 genomes]
rs12445485	0.85[ASN][1000 genomes]
rs12596421	0.82[ASN][1000 genomes]
rs12596520	0.82[ASN][1000 genomes]
rs12598003	0.81[ASN][1000 genomes]
rs12598048	0.81[ASN][1000 genomes]
rs12600298	0.82[ASN][1000 genomes]
rs12708932	0.91[ASN][1000 genomes]
rs12921040	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12924860	0.90[AMR][1000 genomes]
rs13331987	0.82[AFR][1000 genomes]
rs1366846	0.87[ASN][1000 genomes]
rs1366847	0.91[ASN][1000 genomes]
rs1429431	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1429432	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1429433	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1429434	0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1529527	0.83[ASN][1000 genomes]
rs1544964	0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs16970969	0.81[ASN][1000 genomes]
rs16970987	0.82[ASN][1000 genomes]
rs16970998	0.82[ASN][1000 genomes]
rs2040940	0.81[ASN][1000 genomes]
rs2043022	0.94[ASN][1000 genomes]
rs2107153	0.81[ASN][1000 genomes]
rs2115625	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2115626	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2163067	0.85[ASN][1000 genomes]
rs2358805	0.88[ASN][1000 genomes]
rs2358811	0.81[ASN][1000 genomes]
rs28464989	0.83[AFR][1000 genomes]
rs28828717	0.83[AFR][1000 genomes]
rs2884552	0.85[ASN][1000 genomes]
rs2905695	0.83[ASN][1000 genomes]
rs2905696	0.83[ASN][1000 genomes]
rs2914768	0.86[ASN][1000 genomes]
rs2914770	0.86[ASN][1000 genomes]
rs2914772	0.86[ASN][1000 genomes]
rs2914773	0.86[ASN][1000 genomes]
rs2914776	0.82[ASN][1000 genomes]
rs2914778	0.86[ASN][1000 genomes]
rs2914781	0.82[ASN][1000 genomes]
rs292913	0.86[ASN][1000 genomes]
rs292914	0.86[ASN][1000 genomes]
rs292915	0.86[ASN][1000 genomes]
rs292916	0.86[ASN][1000 genomes]
rs292917	0.86[ASN][1000 genomes]
rs292918	0.86[ASN][1000 genomes]
rs292919	0.86[ASN][1000 genomes]
rs292920	0.86[ASN][1000 genomes]
rs292921	0.86[ASN][1000 genomes]
rs292922	0.86[ASN][1000 genomes]
rs292923	0.86[ASN][1000 genomes]
rs292924	0.86[ASN][1000 genomes]
rs292925	0.86[ASN][1000 genomes]
rs292926	0.86[ASN][1000 genomes]
rs292927	0.86[ASN][1000 genomes]
rs292928	0.86[ASN][1000 genomes]
rs292929	0.85[ASN][1000 genomes]
rs292930	0.86[ASN][1000 genomes]
rs292931	0.86[ASN][1000 genomes]
rs292932	0.86[ASN][1000 genomes]
rs292933	0.86[ASN][1000 genomes]
rs292934	0.87[ASN][1000 genomes]
rs292935	0.86[ASN][1000 genomes]
rs292937	0.86[ASN][1000 genomes]
rs292938	0.86[ASN][1000 genomes]
rs292939	0.82[ASN][1000 genomes]
rs292940	0.85[ASN][1000 genomes]
rs292941	0.85[ASN][1000 genomes]
rs292942	0.81[ASN][1000 genomes]
rs292943	0.81[ASN][1000 genomes]
rs2967238	0.83[ASN][1000 genomes]
rs2967239	0.86[ASN][1000 genomes]
rs4278755	0.96[ASN][1000 genomes]
rs4788474	0.91[ASN][1000 genomes]
rs4788655	0.81[ASN][1000 genomes]
rs6499575	0.83[ASN][1000 genomes]
rs6499576	0.83[ASN][1000 genomes]
rs6499578	0.96[ASN][1000 genomes]
rs6499579	0.97[ASN][1000 genomes]
rs6499581	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs714101	0.97[ASN][1000 genomes]
rs714102	0.97[ASN][1000 genomes]
rs7187123	0.97[ASN][1000 genomes]
rs7192128	0.85[ASN][1000 genomes]
rs7194567	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7198782	1.00[EUR][1000 genomes]
rs7199653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7203205	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7203232	0.90[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs74028108	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7405242	0.83[ASN][1000 genomes]
rs8044614	0.97[ASN][1000 genomes]
rs8048815	0.84[ASN][1000 genomes]
rs8053419	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8059268	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8061838	0.82[AFR][1000 genomes]
rs9302640	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs982799	0.87[ASN][1000 genomes]
rs9923006	0.97[ASN][1000 genomes]
rs9924937	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9927280	0.91[ASN][1000 genomes]
rs9933433	1.00[EUR][1000 genomes]
rs9934215	0.96[ASN][1000 genomes]
rs9935202	0.91[ASN][1000 genomes]
rs9935250	0.91[ASN][1000 genomes]
rs9936708	0.91[ASN][1000 genomes]
rs9938038	0.83[AFR][1000 genomes]
rs999210	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060983	chr16:72074832-72791629	Genic enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv1060804	chr16:72078486-72791629	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv534039	chr16:72287171-72851170	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv530712	chr16:72499171-72744114	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv1065173	chr16:72509626-72693970	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv542951	chr16:72509626-72693970	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv1063049	chr16:72577004-72887111	Weak transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
8	nsv542952	chr16:72577004-72887111	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
9	esv1818026	chr16:72633305-72704680	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
10	nsv1059111	chr16:72647569-72751907	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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