Variant report

Variant	rs1429431
Chromosome Location	chr16:72737730-72737731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:72735418..72737835-chr16:72739118..72741118,2	MCF-7	breast:

Extended variants
information (count: 157 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:148)

rs_ID	r²[population]
rs1035983	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1035984	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10400973	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10492826	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11075938	0.84[ASN][1000 genomes]
rs11075940	0.84[ASN][1000 genomes]
rs11861672	0.90[YRI][hapmap]
rs12051226	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12051305	0.92[ASN][1000 genomes]
rs12103150	0.96[YRI][hapmap]
rs12103361	1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs12595874	1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12596196	0.80[AMR][1000 genomes]
rs12597703	0.80[AMR][1000 genomes]
rs12598003	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12598048	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12598858	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12599442	0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12599589	0.80[AMR][1000 genomes]
rs12600293	1.00[CHB][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12708932	0.84[ASN][1000 genomes]
rs12921040	0.84[ASN][1000 genomes]
rs13332877	1.00[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs13333025	0.84[AMR][1000 genomes]
rs1366846	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1366847	0.84[ASN][1000 genomes]
rs1429432	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1429433	0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1429434	0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1544964	0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs16971145	0.96[YRI][hapmap];0.80[AFR][1000 genomes]
rs16971279	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16971281	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16971287	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16971288	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16971290	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16971292	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16971306	0.94[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16971312	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16971314	1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16971315	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16971318	1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16971321	1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1859593	0.90[ASN][1000 genomes]
rs1990096	1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2040939	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2040940	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2043022	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2115625	0.87[ASN][1000 genomes]
rs2115626	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2229286	0.94[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs2229290	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2266932	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2266934	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2266935	0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2266936	1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2266938	1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2266939	0.94[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2266941	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2266942	0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2266944	1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2358805	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2358811	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2358812	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs292913	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs292914	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs292915	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs292916	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs292917	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs292918	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292919	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292920	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292921	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292922	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292923	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292924	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292925	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292926	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292927	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292928	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292929	0.96[ASN][1000 genomes]
rs292930	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292931	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs292932	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs292933	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs292934	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs292935	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs292937	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs292938	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs292939	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs292940	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292941	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292942	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs292943	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs292945	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs292946	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs292947	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3812983	0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4238966	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4278755	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4788474	0.84[ASN][1000 genomes]
rs4788479	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4788655	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4788657	0.90[ASN][1000 genomes]
rs4788663	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs59254438	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs60974482	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6499578	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6499579	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6499581	0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6499589	0.89[AFR][1000 genomes]
rs714101	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs714102	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7187123	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7187768	0.93[YRI][hapmap]
rs7194567	0.89[ASN][1000 genomes]
rs7195234	0.89[YRI][hapmap]
rs7198782	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7199644	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7199653	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7203205	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7203232	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs73584928	0.80[AFR][1000 genomes]
rs73584931	0.80[AFR][1000 genomes]
rs73584955	0.89[AFR][1000 genomes]
rs74028108	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8043976	0.96[YRI][hapmap]
rs8044614	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs8051420	0.96[YRI][hapmap]
rs8053419	0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8053566	0.86[YRI][hapmap]
rs8059268	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs8061838	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9302640	0.88[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs982799	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9921081	0.84[AMR][1000 genomes]
rs9923006	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9924937	0.88[ASN][1000 genomes]
rs9926706	0.93[YRI][hapmap];0.80[AFR][1000 genomes]
rs9927280	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs9929006	0.96[YRI][hapmap];0.81[AFR][1000 genomes]
rs9933433	1.00[CHB][hapmap];0.87[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9934215	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9935202	0.84[ASN][1000 genomes]
rs9935250	0.84[ASN][1000 genomes]
rs9936708	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs9938038	0.93[YRI][hapmap]
rs999210	0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060983	chr16:72074832-72791629	Genic enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv1060804	chr16:72078486-72791629	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv534039	chr16:72287171-72851170	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv530712	chr16:72499171-72744114	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv1063049	chr16:72577004-72887111	Weak transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv542952	chr16:72577004-72887111	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
7	nsv1059111	chr16:72647569-72751907	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	esv1822094	chr16:72694760-72787961	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv572958	chr16:72696112-72778617	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72735200-72738800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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