Variant report

Variant	rs292941
Chromosome Location	chr16:72788601-72788602
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:72783409..72786270-chr16:72788322..72789913,2	MCF-7	breast:

Extended variants
information (count: 145 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:140)

rs_ID	r²[population]
rs1035983	0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1035984	0.95[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10400973	0.83[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs10492826	0.98[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11075940	0.82[AMR][1000 genomes]
rs12051226	0.94[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12051305	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12103361	0.94[CHB][hapmap];1.00[CHD][hapmap];0.87[JPT][hapmap];0.90[MEX][hapmap];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12595874	0.94[CHB][hapmap];1.00[CHD][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12596196	1.00[ASW][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes]
rs12597202	0.89[AMR][1000 genomes]
rs12597703	1.00[ASW][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes]
rs12598003	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12598048	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12598858	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12599442	1.00[ASW][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12599589	0.91[AMR][1000 genomes]
rs12600293	1.00[CHB][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12921040	0.80[ASN][1000 genomes]
rs13332877	0.94[CHB][hapmap];0.85[AMR][1000 genomes]
rs13333025	0.85[AMR][1000 genomes]
rs1366846	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1429431	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1429432	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1429433	0.83[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs1429434	0.83[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs1544964	0.83[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs16971279	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16971281	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16971287	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16971288	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16971290	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16971292	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16971306	1.00[ASW][hapmap];0.88[CHB][hapmap];0.92[CHD][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16971312	1.00[ASW][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs16971314	0.94[CHB][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs16971315	1.00[ASW][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs16971318	1.00[ASW][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16971321	1.00[ASW][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16971324	0.86[AMR][1000 genomes]
rs16971325	1.00[ASW][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes]
rs1859593	0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1990096	1.00[ASW][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2040939	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2040940	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2043022	0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2115625	0.83[ASN][1000 genomes]
rs2115626	0.83[ASN][1000 genomes]
rs2229286	1.00[ASW][hapmap];0.88[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes]
rs2229290	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2266932	1.00[ASW][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2266934	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2266935	0.84[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2266936	0.94[CHB][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2266938	0.94[CHB][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2266939	0.88[CHB][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2266941	0.94[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2266942	0.88[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2266944	0.94[CHB][hapmap];0.87[JPT][hapmap];0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2358805	0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2358811	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2358812	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs292913	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292914	0.96[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292915	0.96[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292916	0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292917	0.96[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292918	0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292919	0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292920	0.96[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292921	0.96[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292922	0.96[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292923	0.96[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292924	0.96[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292925	0.96[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292926	0.96[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292927	0.96[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292928	0.96[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292929	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs292930	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs292932	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs292933	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs292934	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292935	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs292937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs292938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs292939	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs292940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs292942	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs292943	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs292945	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs292946	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs292947	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3812983	1.00[ASW][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4238966	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4278755	0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4788479	0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4788655	0.98[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4788657	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4788663	1.00[ASW][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4788664	1.00[ASW][hapmap];1.00[MEX][hapmap];0.88[AMR][1000 genomes]
rs4788666	0.89[AMR][1000 genomes]
rs4788667	1.00[ASW][hapmap];0.95[MEX][hapmap];0.88[AMR][1000 genomes]
rs4788669	0.88[AMR][1000 genomes]
rs59254438	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs60974482	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6416744	1.00[ASW][hapmap];0.95[MEX][hapmap];0.88[AMR][1000 genomes]
rs6499578	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6499579	1.00[ASW][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.90[MEX][hapmap];0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6499581	1.00[ASW][hapmap];0.83[CHB][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs6499591	1.00[ASW][hapmap];0.95[MEX][hapmap];0.88[AMR][1000 genomes]
rs6499592	0.88[AMR][1000 genomes]
rs6499593	0.89[AMR][1000 genomes]
rs714101	0.94[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs714102	1.00[ASW][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.96[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7187123	0.96[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7194567	0.85[ASN][1000 genomes]
rs7198782	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7199644	0.85[ASN][1000 genomes]
rs7199653	0.85[ASN][1000 genomes]
rs7203205	0.85[ASN][1000 genomes]
rs7203232	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7206490	0.86[AMR][1000 genomes]
rs740176	0.89[AMR][1000 genomes]
rs740177	0.82[MEX][hapmap]
rs74028108	0.90[ASN][1000 genomes]
rs8044614	0.94[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs8053419	0.83[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs8059268	0.83[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs9302640	0.88[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs982799	0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9921081	0.85[AMR][1000 genomes]
rs9923006	0.96[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9924937	0.84[ASN][1000 genomes]
rs9927280	0.94[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes]
rs9933433	0.94[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9934215	0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9936708	0.94[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes]
rs999210	0.83[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060983	chr16:72074832-72791629	Genic enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv1060804	chr16:72078486-72791629	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv534039	chr16:72287171-72851170	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1063049	chr16:72577004-72887111	Weak transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv542952	chr16:72577004-72887111	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72778600-72791400	Weak transcription	Primary B cells from cord blood	blood
2	chr16:72783800-72810600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr16:72785000-72789200	Weak transcription	Ovary	ovary
4	chr16:72785200-72797800	Weak transcription	Fetal Heart	heart
5	chr16:72786200-72797600	Weak transcription	GM12878-XiMat	blood

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