The 2.0 version of rSNPBase

Variant report

Variant rs6499592
Chromosome Location chr16:72913513-72913514
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:84 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr16:72883400-72918800 Weak transcription Rectal Mucosa Donor 31 rectum
2 chr16:72895200-72918000 Weak transcription Rectal Mucosa Donor 29 rectum
3 chr16:72907800-72916400 Weak transcription Fetal Brain Female brain
4 chr16:72908400-72914400 Enhancers Fetal Intestine Large intestine
5 chr16:72909000-72914400 Enhancers Placenta Placenta
6 chr16:72909400-72914000 Enhancers Fetal Muscle Trunk muscle
7 chr16:72909400-72915600 Enhancers Fetal Adrenal Gland Adrenal Gland
8 chr16:72909400-72918200 Weak transcription Brain Substantia Nigra brain
9 chr16:72909600-72918400 Weak transcription Brain Anterior Caudate brain
10 chr16:72910000-72916200 Weak transcription Rectal Smooth Muscle rectum
11 chr16:72910200-72916400 Weak transcription Brain Hippocampus Middle brain
12 chr16:72910400-72920400 Weak transcription Fetal Kidney kidney
13 chr16:72910400-72925200 Weak transcription Primary B cells from cord blood blood
14 chr16:72910600-72915400 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
15 chr16:72910800-72916400 Weak transcription Sigmoid Colon Sigmoid Colon
16 chr16:72910800-72923600 Weak transcription GM12878-XiMat blood
17 chr16:72911200-72918200 Weak transcription Colon Smooth Muscle Colon
18 chr16:72911200-72918200 Weak transcription Monocytes-CD14+_RO01746 blood
19 chr16:72911400-72914400 Enhancers Spleen Spleen
20 chr16:72911600-72918400 Weak transcription Duodenum Smooth Muscle Duodenum
21 chr16:72911800-72914000 Strong transcription Fetal Stomach stomach
22 chr16:72911800-72916200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
23 chr16:72911800-72918600 Weak transcription Primary monocytes fromperipheralblood blood
24 chr16:72912000-72918200 Weak transcription Breast Myoepithelial Primary Cells Breast
25 chr16:72912000-72919000 Weak transcription Gastric stomach
26 chr16:72912200-72913600 Enhancers Fetal Heart heart
27 chr16:72912200-72914000 Genic enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
28 chr16:72912400-72918000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr16:72912400-72920200 Weak transcription Colonic Mucosa Colon
30 chr16:72912400-72927400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
31 chr16:72912400-72928200 Weak transcription Small Intestine intestine
32 chr16:72912600-72916400 Weak transcription Aorta Aorta
33 chr16:72912600-72926000 Weak transcription NHEK skin
34 chr16:72912800-72913800 Genic enhancers Fetal Intestine Small intestine
35 chr16:72912800-72914000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
36 chr16:72912800-72917600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr16:72912800-72917800 Weak transcription Adipose Nuclei Adipose
38 chr16:72912800-72919000 Weak transcription Pancreas Pancrea
39 chr16:72912800-72919000 Weak transcription Stomach Smooth Muscle stomach
40 chr16:72912800-72919000 Weak transcription A549 lung
41 chr16:72912800-72921000 Weak transcription Primary hematopoietic stem cells blood
42 chr16:72912800-72921600 Weak transcription Dnd41 blood
43 chr16:72913000-72913600 Weak transcription Skeletal Muscle Male skeletal muscle
44 chr16:72913000-72913600 Enhancers HepG2 liver
45 chr16:72913000-72913800 Weak transcription Muscle Satellite Cultured Cells --
46 chr16:72913000-72914000 Weak transcription Psoas Muscle Psoas
47 chr16:72913000-72914200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr16:72913000-72916000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
49 chr16:72913000-72916200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
50 chr16:72913000-72916400 Weak transcription Right Atrium heart

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Last update: Aug 31, 2015