Variant report

Variant	rs13333025
Chromosome Location	chr16:72876361-72876362
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:72876308..72878361-chr16:72959854..72961999,2	MCF-7	breast:
2	chr16:72874196..72876790-chr16:72878784..72881907,3	MCF-7	breast:
3	chr16:72868820..72873631-chr16:72873911..72878574,9	MCF-7	breast:
4	chr16:72874571..72877470-chr16:72881574..72886703,5	MCF-7	breast:
5	chr16:72875132..72886767-chr16:73085117..73094489,23	MCF-7	breast:
6	chr16:72873597..72878187-chr16:73079351..73084029,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140836	Chromatin interaction
ENSG00000272250	Chromatin interaction
ENSG00000271009	Chromatin interaction

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs1035983	0.85[AMR][1000 genomes]
rs1035984	0.83[AMR][1000 genomes]
rs10492826	0.83[AMR][1000 genomes]
rs12051226	0.91[AMR][1000 genomes]
rs12103361	0.85[AMR][1000 genomes]
rs12595874	0.93[AMR][1000 genomes]
rs12596196	0.93[AMR][1000 genomes]
rs12597202	0.95[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12597703	0.93[AMR][1000 genomes]
rs12598003	0.85[AMR][1000 genomes]
rs12598048	0.85[AMR][1000 genomes]
rs12598858	0.85[AMR][1000 genomes]
rs12599442	0.93[AMR][1000 genomes]
rs12599589	0.93[AMR][1000 genomes]
rs12600293	0.93[AMR][1000 genomes]
rs13332877	0.87[AMR][1000 genomes]
rs1366846	0.83[AMR][1000 genomes]
rs1429431	0.84[AMR][1000 genomes]
rs1429432	0.84[AMR][1000 genomes]
rs16971279	0.85[AMR][1000 genomes]
rs16971281	0.85[AMR][1000 genomes]
rs16971287	0.85[AMR][1000 genomes]
rs16971288	0.85[AMR][1000 genomes]
rs16971290	0.85[AMR][1000 genomes]
rs16971292	0.85[AMR][1000 genomes]
rs16971306	0.93[AMR][1000 genomes]
rs16971312	0.91[AMR][1000 genomes]
rs16971314	0.90[AMR][1000 genomes]
rs16971315	0.91[AMR][1000 genomes]
rs16971318	0.93[AMR][1000 genomes]
rs16971321	0.93[AMR][1000 genomes]
rs16971324	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16971325	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1990096	0.93[AMR][1000 genomes]
rs2040939	0.85[AMR][1000 genomes]
rs2040940	0.85[AMR][1000 genomes]
rs2043022	0.82[AMR][1000 genomes]
rs2229286	0.88[AMR][1000 genomes]
rs2229290	0.91[AMR][1000 genomes]
rs2266932	0.93[AMR][1000 genomes]
rs2266934	0.93[AMR][1000 genomes]
rs2266935	0.93[AMR][1000 genomes]
rs2266936	0.93[AMR][1000 genomes]
rs2266938	0.93[AMR][1000 genomes]
rs2266939	0.91[AMR][1000 genomes]
rs2266941	0.91[AMR][1000 genomes]
rs2266942	0.91[AMR][1000 genomes]
rs2266944	0.91[AMR][1000 genomes]
rs2358805	0.85[AMR][1000 genomes]
rs2358811	0.85[AMR][1000 genomes]
rs2358812	0.85[AMR][1000 genomes]
rs292914	0.82[AMR][1000 genomes]
rs292915	0.82[AMR][1000 genomes]
rs292917	0.82[AMR][1000 genomes]
rs292920	0.82[AMR][1000 genomes]
rs292921	0.82[AMR][1000 genomes]
rs292922	0.82[AMR][1000 genomes]
rs292923	0.82[AMR][1000 genomes]
rs292924	0.82[AMR][1000 genomes]
rs292925	0.82[AMR][1000 genomes]
rs292926	0.82[AMR][1000 genomes]
rs292927	0.82[AMR][1000 genomes]
rs292928	0.82[AMR][1000 genomes]
rs292929	0.82[AMR][1000 genomes]
rs292930	0.85[AMR][1000 genomes]
rs292931	0.85[AMR][1000 genomes]
rs292932	0.85[AMR][1000 genomes]
rs292933	0.85[AMR][1000 genomes]
rs292934	0.85[AMR][1000 genomes]
rs292935	0.85[AMR][1000 genomes]
rs292937	0.85[AMR][1000 genomes]
rs292938	0.85[AMR][1000 genomes]
rs292939	0.85[AMR][1000 genomes]
rs292940	0.85[AMR][1000 genomes]
rs292941	0.85[AMR][1000 genomes]
rs292942	0.85[AMR][1000 genomes]
rs292943	0.85[AMR][1000 genomes]
rs292945	0.85[AMR][1000 genomes]
rs292946	0.85[AMR][1000 genomes]
rs292947	0.85[AMR][1000 genomes]
rs3812983	0.86[AMR][1000 genomes]
rs4238966	0.85[AMR][1000 genomes]
rs4278755	0.82[AMR][1000 genomes]
rs4788479	0.91[AMR][1000 genomes]
rs4788655	0.83[AMR][1000 genomes]
rs4788657	0.91[AMR][1000 genomes]
rs4788663	0.91[AMR][1000 genomes]
rs4788664	0.93[AMR][1000 genomes]
rs4788666	0.91[AMR][1000 genomes]
rs4788667	0.93[AMR][1000 genomes]
rs4788669	0.93[AMR][1000 genomes]
rs59254438	0.85[AMR][1000 genomes]
rs60974482	0.85[AMR][1000 genomes]
rs6416744	0.93[AMR][1000 genomes]
rs6499591	0.93[AMR][1000 genomes]
rs6499592	0.90[AMR][1000 genomes]
rs6499593	0.91[AMR][1000 genomes]
rs714101	0.82[AMR][1000 genomes]
rs714102	0.82[AMR][1000 genomes]
rs7187123	0.82[AMR][1000 genomes]
rs7198782	0.92[AMR][1000 genomes]
rs7203232	0.84[AMR][1000 genomes]
rs7206490	0.91[AMR][1000 genomes]
rs740176	0.95[AMR][1000 genomes]
rs8044614	0.82[AMR][1000 genomes]
rs982799	0.85[AMR][1000 genomes]
rs9921081	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9923006	0.82[AMR][1000 genomes]
rs9933433	0.93[AMR][1000 genomes]
rs9934215	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063049	chr16:72577004-72887111	Weak transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv542952	chr16:72577004-72887111	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72862600-72882600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr16:72863800-72878600	Weak transcription	Fetal Intestine Large	intestine
3	chr16:72866600-72878000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr16:72867600-72892400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr16:72868600-72881400	Weak transcription	Hela-S3	cervix
6	chr16:72871000-72881800	Weak transcription	Liver	Liver
7	chr16:72872200-72876400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr16:72872200-72883600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr16:72872400-72881200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr16:72872600-72877800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr16:72872600-72878000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr16:72872600-72878600	Weak transcription	Fetal Intestine Small	intestine
13	chr16:72872600-72879400	Weak transcription	Pancreas	Pancrea
14	chr16:72872600-72881400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr16:72872800-72880800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr16:72872800-72881400	Weak transcription	NH-A	brain
17	chr16:72873200-72878200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr16:72873200-72891800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr16:72873400-72877800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr16:72873400-72881800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr16:72873600-72876400	Enhancers	Fetal Lung	lung
22	chr16:72873600-72881400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr16:72873800-72878000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr16:72874200-72876400	Enhancers	Osteobl	bone
25	chr16:72874200-72876800	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr16:72874400-72876400	Enhancers	Brain Anterior Caudate	brain
27	chr16:72875000-72877600	Weak transcription	HepG2	liver
28	chr16:72875000-72878200	Weak transcription	Right Ventricle	heart
29	chr16:72875000-72878400	Weak transcription	Lung	lung
30	chr16:72875000-72882200	Weak transcription	Stomach Mucosa	stomach
31	chr16:72875000-72882400	Weak transcription	Gastric	stomach
32	chr16:72875200-72877400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr16:72875200-72877600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr16:72875200-72877600	Weak transcription	HSMMtube	muscle
35	chr16:72875200-72877800	Weak transcription	Primary hematopoietic stem cells	blood
36	chr16:72875200-72877800	Weak transcription	Right Atrium	heart
37	chr16:72875200-72877800	Weak transcription	HSMM	muscle
38	chr16:72875200-72878000	Weak transcription	Fetal Muscle Trunk	muscle
39	chr16:72875200-72878000	Weak transcription	GM12878-XiMat	blood
40	chr16:72875200-72878200	Weak transcription	Placenta	Placenta
41	chr16:72875200-72878200	Weak transcription	Left Ventricle	heart
42	chr16:72875200-72878200	Weak transcription	NHDF-Ad	bronchial
43	chr16:72875200-72878600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr16:72875200-72878600	Weak transcription	Duodenum Mucosa	Duodenum
45	chr16:72875200-72881800	Weak transcription	Ovary	ovary
46	chr16:72875400-72877000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr16:72875400-72877400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr16:72875400-72877400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr16:72875400-72877800	Weak transcription	Spleen	Spleen
50	chr16:72875400-72878000	Weak transcription	Brain Hippocampus Middle	brain

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