Variant report

Variant	rs7207937
Chromosome Location	chr17:46274552-46274553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr17:46274535-46274779	K562	blood:	n/a	n/a

Variant related genes	Relation type
RNU6-1152P	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11079810	0.86[EUR][1000 genomes]
rs11079813	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1544597	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56258199	0.80[AMR][1000 genomes]
rs60707285	0.87[EUR][1000 genomes]
rs60843764	0.80[AMR][1000 genomes]
rs6504067	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7207553	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7210671	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7219844	0.80[AMR][1000 genomes]
rs7220398	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7221897	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7222646	0.80[AMR][1000 genomes]
rs7224155	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7225288	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73322881	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73322886	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8071697	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9890850	0.80[AMR][1000 genomes]
rs9893110	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9894076	0.86[EUR][1000 genomes]
rs9907268	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7207937	PNPO	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46251200-46277400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr17:46265800-46276200	Weak transcription	GM12878-XiMat	blood
3	chr17:46266800-46298600	Weak transcription	Thymus	Thymus
4	chr17:46266800-46318200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr17:46271000-46274600	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr17:46272200-46276200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr17:46272200-46277000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr17:46272400-46276000	Weak transcription	A549	lung
9	chr17:46272400-46276200	Weak transcription	HUVEC	blood vessel
10	chr17:46272600-46274800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr17:46272600-46275400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr17:46272800-46276400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr17:46273000-46276200	Weak transcription	Fetal Kidney	kidney
14	chr17:46273200-46293000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr17:46273200-46302800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr17:46273200-46314000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr17:46273400-46275200	Strong transcription	Primary T cells from cord blood	blood
18	chr17:46273600-46274600	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr17:46273600-46274800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr17:46273600-46287200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr17:46273800-46278000	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr17:46274000-46290000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr17:46274200-46283200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr17:46274200-46297200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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