Variant report

Variant	rs60707285
Chromosome Location	chr17:46300529-46300530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46296978..46298715-chr17:46299496..46302023,2	K562	blood:
2	chr17:46300434..46303354-chr17:46310850..46313600,3	K562	blood:
3	chr17:46299299..46301509-chr17:46325020..46327334,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SNX11-11	chr17:46299856-46300704	l_1465_chr17:46299137-46300631_prostate

Extended variants
information (count: 36 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11079810	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11079813	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11650476	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11654292	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11658242	0.86[AMR][1000 genomes]
rs12103808	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1544597	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1975703	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28481675	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56258199	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60843764	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6504067	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6504114	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6504115	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7207553	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7207937	0.87[EUR][1000 genomes]
rs7210671	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7219844	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7220398	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7221720	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7221897	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7222646	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7224155	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7225288	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73322881	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73322886	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73324779	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8065797	0.82[AMR][1000 genomes]
rs8071697	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8073220	0.86[AMR][1000 genomes]
rs9890850	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9893110	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9894076	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9905800	0.86[AMR][1000 genomes]
rs9907268	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9909922	0.82[AMR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs60707285	RP5-890E16.2	cis	Nerve Tibial	GTEx
rs60707285	PNPO	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46266800-46318200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr17:46273200-46302800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr17:46273200-46314000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr17:46283600-46314000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr17:46288400-46307000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr17:46293800-46301000	Weak transcription	HUVEC	blood vessel
7	chr17:46294000-46318000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr17:46295000-46301600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr17:46295000-46304400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr17:46295200-46303000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr17:46295800-46303200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr17:46295800-46314200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr17:46296000-46300600	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr17:46297400-46300600	Weak transcription	A549	lung
15	chr17:46297400-46301600	Weak transcription	GM12878-XiMat	blood
16	chr17:46297400-46302000	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr17:46297400-46302800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr17:46297600-46302200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr17:46297600-46314400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr17:46297800-46302800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr17:46298000-46306000	Weak transcription	K562	blood
22	chr17:46298600-46302000	Weak transcription	Primary T cells from cord blood	blood
23	chr17:46299400-46302600	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr17:46300400-46302400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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