Variant report

Variant	rs73324779
Chromosome Location	chr17:46323934-46323935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46321872..46325036-chr17:46699113..46702600,4	K562	blood:
2	chr17:46304803..46307483-chr17:46322659..46325078,2	K562	blood:
3	chr17:46316932..46321831-chr17:46322420..46326261,9	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11079810	0.86[EUR][1000 genomes]
rs11079813	0.87[EUR][1000 genomes]
rs11650476	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11654292	0.81[EUR][1000 genomes]
rs1544597	0.90[EUR][1000 genomes]
rs1975703	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28481675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56258199	0.81[EUR][1000 genomes]
rs60707285	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60843764	0.81[EUR][1000 genomes]
rs6504067	0.90[EUR][1000 genomes]
rs6504114	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6504115	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7207553	0.87[EUR][1000 genomes]
rs7210671	0.87[EUR][1000 genomes]
rs7220398	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7221897	0.87[EUR][1000 genomes]
rs7222646	0.81[EUR][1000 genomes]
rs7224155	0.87[EUR][1000 genomes]
rs7225288	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73322881	0.86[EUR][1000 genomes]
rs73322886	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs8071697	0.90[EUR][1000 genomes]
rs9890850	0.81[EUR][1000 genomes]
rs9893110	0.87[EUR][1000 genomes]
rs9894076	0.86[EUR][1000 genomes]
rs9907268	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs73324779	RP5-890E16.2	cis	Nerve Tibial	GTEx

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46306600-46335400	Weak transcription	Thymus	Thymus
2	chr17:46316400-46324600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr17:46317200-46324000	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr17:46319000-46324800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr17:46319600-46372000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr17:46319800-46324000	Weak transcription	Placenta	Placenta
7	chr17:46321000-46324800	Enhancers	NHEK	skin
8	chr17:46321400-46324200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr17:46321400-46325000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr17:46321800-46325400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr17:46322000-46324400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr17:46322000-46326000	Weak transcription	Fetal Thymus	thymus
13	chr17:46322400-46324000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr17:46322400-46328200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr17:46322400-46328200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr17:46322600-46324000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr17:46322600-46324000	Weak transcription	NHDF-Ad	bronchial
18	chr17:46322600-46324600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr17:46322600-46325000	Enhancers	HUVEC	blood vessel
20	chr17:46322600-46328000	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr17:46322600-46328200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr17:46322600-46328200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr17:46322600-46329400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr17:46322600-46341800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr17:46322600-46342200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr17:46322800-46324200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr17:46322800-46324400	Enhancers	K562	blood
28	chr17:46322800-46356200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr17:46323000-46324800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr17:46323000-46325400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr17:46323000-46370800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr17:46323200-46324600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr17:46323200-46325600	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr17:46323400-46325000	Flanking Active TSS	A549	lung
35	chr17:46323600-46324200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr17:46323600-46324200	Enhancers	HMEC	breast
37	chr17:46323600-46324600	Enhancers	HSMM	muscle
38	chr17:46323600-46324800	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr17:46323600-46326600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr17:46323800-46324000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr17:46323800-46324000	Enhancers	NH-A	brain
42	chr17:46323800-46325200	Genic enhancers	Primary T cells from cord blood	blood
43	chr17:46323800-46325600	Enhancers	Fetal Intestine Large	intestine
44	chr17:46323800-46328200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr17:46323800-46330600	Weak transcription	GM12878-XiMat	blood

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