Variant report

Variant	rs73322881
Chromosome Location	chr17:46267841-46267842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:46244120..46246169-chr17:46266999..46269436,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11079810	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11079813	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11650476	0.86[EUR][1000 genomes]
rs11654292	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11654342	0.84[AMR][1000 genomes]
rs11658242	0.93[AMR][1000 genomes]
rs12103808	0.93[AMR][1000 genomes]
rs1544597	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1975703	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs28481675	0.86[EUR][1000 genomes]
rs56258199	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60707285	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs60843764	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6504067	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6504114	0.86[EUR][1000 genomes]
rs6504115	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7207553	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7207937	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7210671	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7219844	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7220398	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7221720	0.93[AMR][1000 genomes]
rs7221897	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7222646	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7224155	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7225288	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73322886	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73324779	0.86[EUR][1000 genomes]
rs8065797	0.88[AMR][1000 genomes]
rs8067470	0.84[AMR][1000 genomes]
rs8071697	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8073220	0.93[AMR][1000 genomes]
rs9890850	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9893110	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9894076	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9905800	0.93[AMR][1000 genomes]
rs9907268	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9909922	0.88[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs73322881	RP5-890E16.2	cis	Nerve Tibial	GTEx

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46251200-46277400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr17:46252000-46271400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr17:46252600-46271000	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr17:46253200-46270800	Strong transcription	Primary T helper cells PMA-I stimulated	--
5	chr17:46254000-46271000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr17:46255000-46270800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr17:46255200-46270800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr17:46256800-46268400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr17:46260600-46268600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr17:46262800-46269800	Weak transcription	Primary B cells from cord blood	blood
11	chr17:46265600-46271000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr17:46265800-46276200	Weak transcription	GM12878-XiMat	blood
13	chr17:46266200-46270800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr17:46266800-46269200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr17:46266800-46270600	Weak transcription	Fetal Thymus	thymus
16	chr17:46266800-46271000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr17:46266800-46271400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr17:46266800-46298600	Weak transcription	Thymus	Thymus
19	chr17:46266800-46318200	Weak transcription	Primary B cells from peripheral blood	blood
20	chr17:46267000-46268200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr17:46267000-46271000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr17:46267200-46268000	Weak transcription	Primary T cells from cord blood	blood
23	chr17:46267200-46269000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr17:46267400-46268200	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr17:46267400-46271200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links