Variant report

Variant	rs73322886
Chromosome Location	chr17:46270067-46270068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:46263086..46264768-chr17:46269290..46271613,2	K562	blood:
2	chr17:46269238..46271294-chr17:46685390..46688185,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000263787	Chromatin interaction
ENSG00000260027	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11079810	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11079813	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11650476	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11654292	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11654342	0.84[AMR][1000 genomes]
rs11658242	0.93[AMR][1000 genomes]
rs12103808	0.93[AMR][1000 genomes]
rs1544597	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1975703	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs28481675	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs56258199	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60707285	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60843764	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6504067	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6504114	0.85[EUR][1000 genomes]
rs6504115	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7207553	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7207937	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7210671	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7219844	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7220398	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7221720	0.93[AMR][1000 genomes]
rs7221897	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7222646	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7224155	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7225288	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73322881	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73324779	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs8065797	0.88[AMR][1000 genomes]
rs8067470	0.84[AMR][1000 genomes]
rs8071697	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8073220	0.93[AMR][1000 genomes]
rs9890850	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9893110	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9894076	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9905800	0.93[AMR][1000 genomes]
rs9907268	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9909922	0.88[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs73322886	RP5-890E16.2	cis	Nerve Tibial	GTEx

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46251200-46277400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr17:46252000-46271400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr17:46252600-46271000	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr17:46253200-46270800	Strong transcription	Primary T helper cells PMA-I stimulated	--
5	chr17:46254000-46271000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr17:46255000-46270800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr17:46255200-46270800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr17:46265600-46271000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr17:46265800-46276200	Weak transcription	GM12878-XiMat	blood
10	chr17:46266200-46270800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr17:46266800-46270600	Weak transcription	Fetal Thymus	thymus
12	chr17:46266800-46271000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr17:46266800-46271400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr17:46266800-46298600	Weak transcription	Thymus	Thymus
15	chr17:46266800-46318200	Weak transcription	Primary B cells from peripheral blood	blood
16	chr17:46267000-46271000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr17:46267400-46271200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr17:46268000-46271400	Strong transcription	Primary T cells from cord blood	blood
19	chr17:46268200-46271000	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr17:46268400-46271800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr17:46268400-46272400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr17:46268600-46270400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr17:46269200-46270400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
24	chr17:46269200-46271200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr17:46269200-46272000	Enhancers	H1 Cell Line	embryonic stem cell
26	chr17:46269400-46270200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr17:46269400-46270200	Active TSS	iPS-20b Cell Line	embryonic stem cell
28	chr17:46269400-46270400	Enhancers	HSMM	muscle
29	chr17:46269400-46270800	Enhancers	Fetal Brain Male	brain
30	chr17:46269400-46271400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr17:46269600-46270200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr17:46269600-46272000	Enhancers	Osteobl	bone
33	chr17:46269800-46270200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr17:46269800-46270200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
35	chr17:46269800-46270200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
36	chr17:46269800-46270400	Enhancers	NH-A	brain
37	chr17:46270000-46270200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
38	chr17:46270000-46270400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
39	chr17:46270000-46270400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
40	chr17:46270000-46270400	Enhancers	HSMMtube	muscle
41	chr17:46270000-46271000	Enhancers	Brain Germinal Matrix	brain
42	chr17:46270000-46271400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr17:46270000-46271600	Weak transcription	A549	lung

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