Variant report

Variant	rs721607
Chromosome Location	chr11:56997832-56997833
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:56996267..56998926-chr11:57000187..57002136,2	K562	blood:
2	chr11:56992305..56993973-chr11:56996074..56998381,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10896578	0.86[CEU][hapmap]
rs17573746	1.00[YRI][hapmap]
rs1893677	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1943482	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2282623	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2282624	0.82[CEU][hapmap];0.87[JPT][hapmap]
rs56229060	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs57944700	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7109894	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs746886	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.87[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7931298	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs721607	OR10AG1	cis	parietal	SCAN
rs721607	OR5T2	cis	parietal	SCAN
rs721607	OR4A15	cis	cerebellum	SCAN
rs721607	OR9I1	cis	cerebellum	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56987600-57000800	Weak transcription	Spleen	Spleen
2	chr11:56992600-56998600	Weak transcription	Brain Anterior Caudate	brain
3	chr11:56992800-56998400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:56996000-56998000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:56996200-56998400	Weak transcription	Right Ventricle	heart
6	chr11:56996600-56998600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr11:56996800-56998400	Weak transcription	Left Ventricle	heart
8	chr11:56997200-56998400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:56997400-56998000	Enhancers	Brain Cingulate Gyrus	brain
10	chr11:56997400-56998400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:56997400-56998800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:56997400-56999000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:56997600-56998200	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr11:56997600-56998400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:56997600-56998400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:56997600-56998400	Weak transcription	HSMM	muscle
17	chr11:56997800-56998000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:56997800-56998000	Enhancers	Fetal Lung	lung
19	chr11:56997800-56998200	Enhancers	Fetal Muscle Leg	muscle
20	chr11:56997800-56998800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:56997800-56998800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:56997800-56998800	Enhancers	HSMMtube	muscle
23	chr11:56997800-56999200	Bivalent Enhancer	Osteobl	bone
24	chr11:56997800-56999400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr11:56997800-57000600	Enhancers	Adipose Nuclei	Adipose

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