Variant report

Variant	rs56229060
Chromosome Location	chr11:56990855-56990856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:56989037..56991877-chr11:56993430..56996007,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10896586	0.84[EUR][1000 genomes]
rs11228951	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11602335	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11606597	0.81[EUR][1000 genomes]
rs12223141	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1893677	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1943482	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2156456	0.83[EUR][1000 genomes]
rs2282623	0.80[AMR][1000 genomes]
rs56074283	0.83[EUR][1000 genomes]
rs57944700	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61888863	0.81[EUR][1000 genomes]
rs61888865	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61888866	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7109894	0.86[ASN][1000 genomes]
rs7124474	0.81[EUR][1000 genomes]
rs721607	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs746886	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56982600-56991000	Weak transcription	Osteobl	bone
2	chr11:56982600-56991800	Weak transcription	NHDF-Ad	bronchial
3	chr11:56984800-56991000	Weak transcription	HSMMtube	muscle
4	chr11:56984800-56991200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:56987000-56991400	Weak transcription	Brain Anterior Caudate	brain
6	chr11:56987200-56991200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:56987200-56991400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:56987200-56995200	Weak transcription	Left Ventricle	heart
9	chr11:56987600-57000800	Weak transcription	Spleen	Spleen
10	chr11:56988600-56992400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:56988600-56992400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:56988600-56992800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:56989000-56991600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr11:56989600-56992800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:56989600-56997800	Weak transcription	Adipose Nuclei	Adipose
16	chr11:56990000-56991000	Weak transcription	HSMM	muscle
17	chr11:56990000-56991400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:56990000-56991600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:56990000-56991600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr11:56990000-56991600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:56990400-56991400	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr11:56990400-56992200	Weak transcription	HUVEC	blood vessel
23	chr11:56990600-56991600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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