Variant report

Variant	rs2156456
Chromosome Location	chr11:56975099-56975100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10501364	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10896578	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10896586	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11228949	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11228951	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11602335	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11605468	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11606597	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12223141	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1815860	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1893677	0.82[EUR][1000 genomes]
rs1943482	0.82[EUR][1000 genomes]
rs2282623	0.86[CEU][hapmap]
rs2282624	0.86[CHD][hapmap]
rs542855	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56074283	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56229060	0.83[EUR][1000 genomes]
rs57944700	0.81[EUR][1000 genomes]
rs61888863	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61888865	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61888866	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7124474	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs717211	0.81[ASN][1000 genomes]
rs746886	0.86[CEU][hapmap];0.95[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs2156456	OR8H1	cis	parietal	SCAN
rs2156456	OR10AG1	cis	parietal	SCAN
rs2156456	MS4A13	cis	cerebellum	SCAN
rs2156456	OR9I1	cis	cerebellum	SCAN
rs2156456	OR9Q1	cis	parietal	SCAN
rs2156456	OR5W2	cis	parietal	SCAN
rs2156456	OR5J2	cis	cerebellum	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56968200-56975200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
2	chr11:56971200-56978000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:56973000-56977800	Weak transcription	Fetal Lung	lung
4	chr11:56973400-56977000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:56973400-56978000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:56973600-56977600	Weak transcription	Fetal Stomach	stomach
7	chr11:56973600-56978000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:56973600-56978000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr11:56973600-56980200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:56973800-56978000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr11:56973800-56978000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:56973800-56978200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr11:56974000-56978000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:56974000-56978200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:56974000-56980400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr11:56974000-56981000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr11:56974200-56975200	Enhancers	Spleen	Spleen
18	chr11:56974200-56978200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr11:56974400-56975200	Enhancers	Left Ventricle	heart
20	chr11:56974400-56975400	Enhancers	Fetal Muscle Leg	muscle
21	chr11:56974400-56977600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr11:56974400-56978000	Weak transcription	Lung	lung
23	chr11:56974600-56975600	Enhancers	Adipose Nuclei	Adipose
24	chr11:56974800-56975200	Enhancers	Right Atrium	heart
25	chr11:56974800-56978200	Weak transcription	Right Ventricle	heart
26	chr11:56975000-56978200	Weak transcription	Fetal Muscle Trunk	muscle

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