Variant report

Variant	rs1943482
Chromosome Location	chr11:56995609-56995610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10896578	1.00[CEU][hapmap]
rs10896586	0.84[EUR][1000 genomes]
rs11228951	0.82[EUR][1000 genomes]
rs11602335	0.82[EUR][1000 genomes]
rs12223141	0.82[EUR][1000 genomes]
rs17573746	1.00[YRI][hapmap]
rs1893677	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2156456	0.82[EUR][1000 genomes]
rs2282623	0.87[CEU][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2282624	0.87[JPT][hapmap]
rs56074283	0.82[EUR][1000 genomes]
rs56229060	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57944700	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61888865	0.81[EUR][1000 genomes]
rs61888866	0.82[EUR][1000 genomes]
rs7109894	0.99[ASN][1000 genomes]
rs721607	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs746886	0.86[CEU][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7931298	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56987600-57000800	Weak transcription	Spleen	Spleen
2	chr11:56989600-56997800	Weak transcription	Adipose Nuclei	Adipose
3	chr11:56992400-56995800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:56992400-56995800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr11:56992400-56997400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:56992600-56997400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:56992600-56997800	Weak transcription	HSMMtube	muscle
8	chr11:56992600-56998600	Weak transcription	Brain Anterior Caudate	brain
9	chr11:56992800-56997600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:56992800-56998400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:56994000-56997600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:56995200-56996800	Enhancers	Left Ventricle	heart
13	chr11:56995600-56996600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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