Variant report

Variant	rs61888866
Chromosome Location	chr11:56981058-56981059
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10501364	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10896578	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10896586	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11228949	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11228951	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11602335	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11605468	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11606597	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12223141	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1815860	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1893677	0.82[EUR][1000 genomes]
rs1943482	0.82[EUR][1000 genomes]
rs2156456	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs542855	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56074283	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56229060	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57944700	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61888863	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61888865	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7124474	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56977000-56983000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:56977400-56981200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:56977400-56981200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:56978800-56981200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:56979000-56984400	Weak transcription	Spleen	Spleen
6	chr11:56979600-56984000	Enhancers	Fetal Brain Male	brain
7	chr11:56979800-56982200	Enhancers	Fetal Lung	lung
8	chr11:56980000-56981400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:56980200-56982200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:56980200-56982600	Enhancers	Fetal Stomach	stomach
11	chr11:56980400-56981600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:56980400-56982200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:56980400-56982400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr11:56980400-56982600	Enhancers	Fetal Muscle Leg	muscle
15	chr11:56980600-56981200	Bivalent Enhancer	Stomach Smooth Muscle	stomach
16	chr11:56980600-56981200	Enhancers	HSMMtube	muscle
17	chr11:56980600-56981400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr11:56980600-56981400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
19	chr11:56980600-56981600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
20	chr11:56980600-56981600	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr11:56980600-56981600	Enhancers	Primary hematopoietic stem cells	blood
22	chr11:56980600-56981800	Enhancers	Muscle Satellite Cultured Cells	--
23	chr11:56980600-56982000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:56980600-56982000	Flanking Active TSS	Brain Germinal Matrix	brain
25	chr11:56980600-56982000	Enhancers	Lung	lung
26	chr11:56980600-56982000	Enhancers	Right Ventricle	heart
27	chr11:56980600-56982200	Enhancers	Brain Anterior Caudate	brain
28	chr11:56980600-56982600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:56980600-56982600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:56980600-56982600	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr11:56980600-56982600	Enhancers	NHDF-Ad	bronchial
32	chr11:56980600-56983200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr11:56980800-56981200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
34	chr11:56980800-56981200	Active TSS	H9 Cell Line	embryonic stem cell
35	chr11:56980800-56981200	Active TSS	HUES6 Cell Line	embryonic stem cell
36	chr11:56980800-56981200	Active TSS	iPS-20b Cell Line	embryonic stem cell
37	chr11:56980800-56981200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr11:56980800-56981200	Flanking Active TSS	Adipose Nuclei	Adipose
39	chr11:56980800-56981200	Enhancers	Brain Cingulate Gyrus	brain
40	chr11:56980800-56981200	Enhancers	NH-A	brain
41	chr11:56980800-56981400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
42	chr11:56980800-56981600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:56980800-56981800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr11:56980800-56981800	Enhancers	HSMM	muscle
45	chr11:56980800-56982000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr11:56980800-56982000	Enhancers	Fetal Kidney	kidney
47	chr11:56980800-56982000	Enhancers	Fetal Muscle Trunk	muscle
48	chr11:56980800-56982400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr11:56980800-56982400	Enhancers	Placenta	Placenta
50	chr11:56980800-56982600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links