Variant report

Variant	rs11228951
Chromosome Location	chr11:56977629-56977630
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:56950383..56952572-chr11:56977333..56980182,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10501364	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10896578	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10896586	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11228949	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11602335	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605468	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11606597	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12223141	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1815860	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1893677	0.82[EUR][1000 genomes]
rs1943482	0.82[EUR][1000 genomes]
rs2156456	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2282623	0.86[CEU][hapmap]
rs542855	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56074283	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56229060	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57944700	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61888863	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61888865	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61888866	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7124474	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs717211	0.97[ASN][1000 genomes]
rs746886	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56971200-56978000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:56973000-56977800	Weak transcription	Fetal Lung	lung
3	chr11:56973400-56978000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr11:56973600-56978000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:56973600-56978000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:56973600-56980200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:56973800-56978000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:56973800-56978000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:56973800-56978200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:56974000-56978000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:56974000-56978200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr11:56974000-56980400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:56974000-56981000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:56974200-56978200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:56974400-56978000	Weak transcription	Lung	lung
16	chr11:56974800-56978200	Weak transcription	Right Ventricle	heart
17	chr11:56975000-56978200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr11:56975200-56978400	Weak transcription	Left Ventricle	heart
19	chr11:56975200-56981000	Weak transcription	Right Atrium	heart
20	chr11:56975600-56978200	Weak transcription	Adipose Nuclei	Adipose
21	chr11:56977000-56983000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr11:56977400-56978200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr11:56977400-56981200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:56977400-56981200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:56977600-56978800	Enhancers	Fetal Muscle Leg	muscle
26	chr11:56977600-56978800	Enhancers	Fetal Stomach	stomach
27	chr11:56977600-56979000	Enhancers	Spleen	Spleen
28	chr11:56977600-56979200	Enhancers	Skeletal Muscle Male	skeletal muscle

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