Variant report

Variant	rs723639
Chromosome Location	chr8:129806997-129806998
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:129805990..129808282-chr8:129810250..129812846,2	MCF-7	breast:

rs_ID	r²[population]
rs10092273	0.84[JPT][hapmap]
rs11785020	0.88[ASN][1000 genomes]
rs1356761	0.86[ASN][1000 genomes]
rs1356762	0.98[ASN][1000 genomes]
rs1519839	0.88[ASN][1000 genomes]
rs2060145	0.86[ASN][1000 genomes]
rs2116457	0.98[ASN][1000 genomes]
rs3847138	0.98[ASN][1000 genomes]
rs4338065	0.86[ASN][1000 genomes]
rs4593504	0.85[JPT][hapmap]
rs7845615	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129784000-129809800	Weak transcription	Dnd41	blood
2	chr8:129805200-129807600	Enhancers	HUVEC	blood vessel
3	chr8:129805400-129808200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:129805600-129807600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr8:129805600-129807800	Enhancers	Brain Germinal Matrix	brain
6	chr8:129805800-129807600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:129806000-129807600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr8:129806000-129807600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:129806000-129807600	Enhancers	Liver	Liver
10	chr8:129806000-129807800	Enhancers	HSMM	muscle
11	chr8:129806000-129808200	Enhancers	Fetal Muscle Leg	muscle
12	chr8:129806000-129808600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr8:129806200-129807000	Enhancers	Fetal Muscle Trunk	muscle
14	chr8:129806200-129807600	Enhancers	Fetal Stomach	stomach
15	chr8:129806200-129807800	Enhancers	NHDF-Ad	bronchial
16	chr8:129806400-129807000	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr8:129806400-129807200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr8:129806400-129807200	Enhancers	Pancreas	Pancrea
19	chr8:129806400-129807600	Enhancers	HSMMtube	muscle
20	chr8:129806400-129807600	Enhancers	NH-A	brain
21	chr8:129806600-129807000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr8:129806600-129807000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr8:129806600-129807000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr8:129806600-129807000	Enhancers	Fetal Brain Female	brain
25	chr8:129806600-129807000	Enhancers	Fetal Intestine Small	intestine
26	chr8:129806600-129807000	Enhancers	Left Ventricle	heart
27	chr8:129806600-129807000	Enhancers	Lung	lung
28	chr8:129806600-129807200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr8:129806600-129807200	Enhancers	Small Intestine	intestine
30	chr8:129806600-129807400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr8:129806600-129807400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr8:129806600-129807400	Enhancers	Fetal Brain Male	brain
33	chr8:129806600-129807600	Enhancers	Colon Smooth Muscle	Colon
34	chr8:129806600-129807600	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr8:129806600-129807600	Enhancers	NHLF	lung
36	chr8:129806600-129807800	Enhancers	Fetal Lung	lung
37	chr8:129806600-129807800	Enhancers	Ovary	ovary
38	chr8:129806800-129807200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr8:129806800-129807200	Enhancers	Duodenum Mucosa	Duodenum
40	chr8:129806800-129807400	Enhancers	Colonic Mucosa	Colon
41	chr8:129806800-129807400	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr8:129806800-129807400	Enhancers	Fetal Intestine Large	intestine
43	chr8:129806800-129807600	Enhancers	Adipose Nuclei	Adipose
44	chr8:129806800-129807600	Enhancers	Brain Anterior Caudate	brain
45	chr8:129806800-129807600	Enhancers	Rectal Smooth Muscle	rectum
46	chr8:129806800-129807600	Enhancers	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links