Variant report

Variant	rs10092273
Chromosome Location	chr8:129870831-129870832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:129868858..129872488-chr8:129878808..129881369,3	K562	blood:
2	chr8:128813410..128816212-chr8:129870107..129873143,3	MCF-7	breast:
3	chr8:128746642..128751324-chr8:129868978..129871457,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136997	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10094688	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10103995	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10447999	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10956447	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10956448	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10956449	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10956450	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11776624	0.81[ASN][1000 genomes]
rs11782234	0.92[EUR][1000 genomes]
rs11785020	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12547429	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12550594	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12675522	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12676288	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12677710	0.89[EUR][1000 genomes]
rs12677712	0.89[EUR][1000 genomes]
rs12678715	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12679405	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12680246	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13276570	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13277797	0.97[EUR][1000 genomes]
rs13281755	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1356763	0.91[EUR][1000 genomes]
rs1441992	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1519839	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1519853	0.83[EUR][1000 genomes]
rs1519854	0.83[EUR][1000 genomes]
rs1519855	0.83[EUR][1000 genomes]
rs17239733	0.90[EUR][1000 genomes]
rs17240568	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17240784	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17241323	1.00[CEU][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17819852	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1879165	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2056313	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2894458	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35526947	0.81[EUR][1000 genomes]
rs35902990	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4593504	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs4733652	0.91[EUR][1000 genomes]
rs4733656	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4733657	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6995598	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6996154	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6999288	0.91[EUR][1000 genomes]
rs7831440	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7842437	0.89[EUR][1000 genomes]
rs871502	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9656973	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517445	chr8:129859924-129881299	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129864200-129873200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:129864200-129873200	Weak transcription	NH-A	brain
3	chr8:129864400-129873400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr8:129866600-129873200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:129867200-129873200	Weak transcription	Osteobl	bone
6	chr8:129868000-129873000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr8:129869200-129871800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:129869200-129871800	Weak transcription	NHDF-Ad	bronchial
9	chr8:129869200-129873000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:129870200-129871000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:129870400-129871800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr8:129870400-129872400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr8:129870800-129871400	Weak transcription	Dnd41	blood

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