Variant report

Variant	rs4593504
Chromosome Location	chr8:129805238-129805239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:128748045..128750973-chr8:129803903..129805461,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136997	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10092273	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10094688	0.86[EUR][1000 genomes]
rs10102013	0.94[ASN][1000 genomes]
rs10103995	0.86[EUR][1000 genomes]
rs10447999	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10956447	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10956448	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10956449	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10956450	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11782234	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11785020	0.93[EUR][1000 genomes]
rs12547429	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12550594	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12674882	0.96[ASN][1000 genomes]
rs12675522	0.88[EUR][1000 genomes]
rs12676288	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12677710	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12677712	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12678715	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12679405	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12680246	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13276570	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13277797	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13281755	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1356763	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1441992	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1519839	0.93[EUR][1000 genomes]
rs1519853	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1519854	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1519855	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17239733	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17240568	0.85[EUR][1000 genomes]
rs17240784	0.87[EUR][1000 genomes]
rs17241323	1.00[CEU][hapmap];0.80[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17819852	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1879165	0.87[EUR][1000 genomes]
rs2056313	0.87[EUR][1000 genomes]
rs2894458	0.86[EUR][1000 genomes]
rs35526947	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35902990	0.90[AMR][1000 genomes]
rs3847140	0.80[EUR][1000 genomes]
rs4733652	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4733656	0.86[EUR][1000 genomes]
rs4733657	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6995598	0.86[EUR][1000 genomes]
rs6996154	0.86[EUR][1000 genomes]
rs6999288	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7831440	0.88[EUR][1000 genomes]
rs7842437	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs871502	0.86[EUR][1000 genomes]
rs9656973	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129784000-129809800	Weak transcription	Dnd41	blood
2	chr8:129801000-129806000	Weak transcription	HSMM	muscle
3	chr8:129801000-129806600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:129801200-129806000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:129801200-129806600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:129801400-129806200	Weak transcription	NHDF-Ad	bronchial
7	chr8:129801400-129806600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:129805200-129807600	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links