Variant report

Variant	rs1879165
Chromosome Location	chr8:129873125-129873126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:129872569..129876540-chr8:129878616..129881184,3	K562	blood:
2	chr8:128813410..128816212-chr8:129870107..129873143,3	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10092273	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10094688	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10103995	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10447999	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10956447	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10956448	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10956449	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10956450	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11776624	0.81[ASN][1000 genomes]
rs11782234	0.92[EUR][1000 genomes]
rs11785020	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12547429	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12550594	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12675522	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12676288	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12677710	0.89[EUR][1000 genomes]
rs12677712	0.89[EUR][1000 genomes]
rs12678715	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12679405	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12680246	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13276570	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13277797	0.96[EUR][1000 genomes]
rs13281755	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1356763	0.90[EUR][1000 genomes]
rs1441992	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1519839	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1519853	0.83[EUR][1000 genomes]
rs1519854	0.83[EUR][1000 genomes]
rs1519855	0.83[EUR][1000 genomes]
rs17239733	0.89[EUR][1000 genomes]
rs17240568	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17240784	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17241323	1.00[CEU][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17819852	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2056313	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2894458	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35526947	0.80[EUR][1000 genomes]
rs35902990	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4593504	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4733652	0.90[EUR][1000 genomes]
rs4733656	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4733657	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6995598	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6996154	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6999288	0.90[EUR][1000 genomes]
rs7831440	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7842437	0.89[EUR][1000 genomes]
rs871502	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9656973	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517445	chr8:129859924-129881299	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129864200-129873200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:129864200-129873200	Weak transcription	NH-A	brain
3	chr8:129864400-129873400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr8:129866600-129873200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:129867200-129873200	Weak transcription	Osteobl	bone
6	chr8:129871600-129873600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:129871600-129875400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr8:129871800-129873600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:129872000-129877000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr8:129872400-129873200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr8:129872600-129873200	Enhancers	NHEK	skin
12	chr8:129872600-129873400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:129872600-129873400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:129872600-129873600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:129872600-129875800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr8:129872600-129875800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr8:129872600-129877200	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr8:129872800-129873200	Enhancers	NHDF-Ad	bronchial
19	chr8:129872800-129873200	Enhancers	NHLF	lung
20	chr8:129872800-129873600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr8:129872800-129873600	Enhancers	Fetal Stomach	stomach
22	chr8:129872800-129875600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr8:129872800-129875600	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr8:129873000-129873400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr8:129873000-129873400	Enhancers	HMEC	breast
26	chr8:129873000-129874000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr8:129873000-129875000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr8:129873000-129875200	Enhancers	H1 Cell Line	embryonic stem cell
29	chr8:129873000-129875200	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr8:129873000-129875600	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr8:129873000-129876000	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr8:129873000-129876200	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links