Variant report

Variant	rs11782234
Chromosome Location	chr8:129911677-129911678
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10092273	0.92[EUR][1000 genomes]
rs10094688	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10103995	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10447999	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10956447	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10956448	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10956449	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10956450	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12547429	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12550594	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12675522	0.92[EUR][1000 genomes]
rs12676288	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12677710	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12677712	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12678715	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12679405	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12680246	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13276570	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13277797	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13281755	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1356763	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1441992	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17239733	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17240568	0.90[EUR][1000 genomes]
rs17240784	0.92[EUR][1000 genomes]
rs17241323	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17819852	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1879165	0.92[EUR][1000 genomes]
rs2056313	0.92[EUR][1000 genomes]
rs2894458	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35902990	0.90[AMR][1000 genomes]
rs4593504	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4733652	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4733656	0.89[EUR][1000 genomes]
rs4733657	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6995598	0.89[EUR][1000 genomes]
rs6996154	0.89[EUR][1000 genomes]
rs6999288	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7831440	0.92[EUR][1000 genomes]
rs7842437	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs871502	0.89[EUR][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129903400-129911800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:129909600-129912000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr8:129910000-129912800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr8:129910200-129911800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr8:129910200-129913600	Enhancers	Osteobl	bone
6	chr8:129910600-129911800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:129910600-129913800	Enhancers	HSMM	muscle
8	chr8:129910800-129911800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr8:129910800-129912000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr8:129910800-129912000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:129910800-129912400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:129911000-129911800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr8:129911000-129912200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr8:129911000-129912600	Enhancers	Muscle Satellite Cultured Cells	--
15	chr8:129911200-129911800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr8:129911200-129912200	Enhancers	Fetal Muscle Leg	muscle
17	chr8:129911200-129912600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr8:129911200-129913600	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr8:129911200-129913600	Enhancers	NHDF-Ad	bronchial
20	chr8:129911400-129911800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr8:129911400-129913000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:129911400-129913000	Weak transcription	Psoas Muscle	Psoas
23	chr8:129911400-129913600	Enhancers	HSMMtube	muscle
24	chr8:129911600-129912000	Enhancers	Dnd41	blood
25	chr8:129911600-129912600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr8:129911600-129912800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr8:129911600-129912800	Weak transcription	Left Ventricle	heart
28	chr8:129911600-129913000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links