Variant report

Variant	rs12678715
Chromosome Location	chr8:129909836-129909837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10092273	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10094688	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10103995	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10447999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956447	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10956448	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10956449	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10956450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11782234	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11785020	0.80[EUR][1000 genomes]
rs12547429	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12550594	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12675522	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12676288	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12677710	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12677712	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12679405	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12680246	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13276570	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13277797	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13281755	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1356763	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1441992	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1519839	0.80[EUR][1000 genomes]
rs17239733	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17240568	0.91[EUR][1000 genomes]
rs17240784	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17241323	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17819852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1879165	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2056313	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2894458	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35902990	0.91[AMR][1000 genomes]
rs4593504	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4733652	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4733656	0.90[EUR][1000 genomes]
rs4733657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6995598	0.90[EUR][1000 genomes]
rs6996154	0.90[EUR][1000 genomes]
rs6999288	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7831440	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7842437	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs871502	0.90[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129903400-129911800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:129903800-129911600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:129908200-129910600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:129909600-129910000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr8:129909600-129910000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr8:129909600-129910600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr8:129909600-129912000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr8:129909800-129910400	Strong transcription	Dnd41	blood
9	chr8:129909800-129910400	Enhancers	Hela-S3	cervix
10	chr8:129909800-129910600	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links