Variant report

Variant	rs1519839
Chromosome Location	chr8:129811469-129811470
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:129805990..129808282-chr8:129810250..129812846,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10092273	1.00[CEU][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10094688	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10103995	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10447999	0.80[EUR][1000 genomes]
rs10956447	0.89[EUR][1000 genomes]
rs10956448	0.89[EUR][1000 genomes]
rs10956449	0.84[EUR][1000 genomes]
rs10956450	0.83[EUR][1000 genomes]
rs11785020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12547429	0.88[EUR][1000 genomes]
rs12550594	0.84[EUR][1000 genomes]
rs12675522	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12676288	0.89[EUR][1000 genomes]
rs12677710	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12677712	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12678715	0.80[EUR][1000 genomes]
rs12679405	0.87[EUR][1000 genomes]
rs12680246	0.84[EUR][1000 genomes]
rs13276570	0.84[EUR][1000 genomes]
rs13277797	0.84[EUR][1000 genomes]
rs13281755	0.90[EUR][1000 genomes]
rs1356761	0.98[ASN][1000 genomes]
rs1356762	0.86[ASN][1000 genomes]
rs1356763	0.96[EUR][1000 genomes]
rs1441992	0.84[EUR][1000 genomes]
rs1519853	0.89[EUR][1000 genomes]
rs1519854	0.89[EUR][1000 genomes]
rs1519855	0.89[EUR][1000 genomes]
rs17239733	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17240568	0.84[EUR][1000 genomes]
rs17240784	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17241323	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17819852	0.82[EUR][1000 genomes]
rs1879165	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2056313	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2060145	0.98[ASN][1000 genomes]
rs2116457	0.86[ASN][1000 genomes]
rs2894458	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35526947	0.86[EUR][1000 genomes]
rs3847138	0.86[ASN][1000 genomes]
rs3847140	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4338065	0.98[ASN][1000 genomes]
rs4593504	1.00[CEU][hapmap];0.85[JPT][hapmap];0.93[EUR][1000 genomes]
rs4733652	0.87[EUR][1000 genomes]
rs4733656	0.87[EUR][1000 genomes]
rs4733657	0.83[EUR][1000 genomes]
rs6995598	0.87[EUR][1000 genomes]
rs6996154	0.87[EUR][1000 genomes]
rs6999288	0.96[EUR][1000 genomes]
rs723639	0.88[ASN][1000 genomes]
rs7831440	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7842437	0.95[EUR][1000 genomes]
rs871502	0.87[EUR][1000 genomes]
rs9656973	0.90[EUR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129807000-129812200	Weak transcription	Fetal Intestine Small	intestine
2	chr8:129807000-129820800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:129807600-129811600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr8:129807600-129812000	Weak transcription	Fetal Stomach	stomach
5	chr8:129808800-129811600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr8:129809800-129813000	Strong transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links