Variant report

Variant	rs1519854
Chromosome Location	chr8:129801506-129801507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10092273	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10094688	0.82[EUR][1000 genomes]
rs10102013	1.00[ASN][1000 genomes]
rs10103995	0.82[EUR][1000 genomes]
rs10956447	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10956448	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10956449	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11785020	0.89[EUR][1000 genomes]
rs12547429	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12550594	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12674882	0.97[ASN][1000 genomes]
rs12675522	0.83[EUR][1000 genomes]
rs12676288	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12677710	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12677712	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12679405	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12680246	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13276570	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13277797	0.81[EUR][1000 genomes]
rs13281755	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1356763	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1441992	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1519839	0.89[EUR][1000 genomes]
rs1519853	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519855	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17239733	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17240568	0.81[EUR][1000 genomes]
rs17240784	0.83[EUR][1000 genomes]
rs17241323	1.00[CEU][hapmap];0.80[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1879165	0.83[EUR][1000 genomes]
rs2056313	0.83[EUR][1000 genomes]
rs2894458	0.82[EUR][1000 genomes]
rs35526947	0.82[EUR][1000 genomes]
rs35902990	0.83[AMR][1000 genomes]
rs4593504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4733652	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4733656	0.83[EUR][1000 genomes]
rs6995598	0.83[EUR][1000 genomes]
rs6996154	0.83[EUR][1000 genomes]
rs6999288	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7831440	0.83[EUR][1000 genomes]
rs7842437	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs871502	0.83[EUR][1000 genomes]
rs9656973	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129784000-129809800	Weak transcription	Dnd41	blood
2	chr8:129798400-129801800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr8:129798600-129802400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr8:129801000-129805200	Weak transcription	HUVEC	blood vessel
5	chr8:129801000-129806000	Weak transcription	HSMM	muscle
6	chr8:129801000-129806600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:129801200-129806000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr8:129801200-129806600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:129801400-129801600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr8:129801400-129806200	Weak transcription	NHDF-Ad	bronchial
11	chr8:129801400-129806600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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