Variant report

Variant	rs12677712
Chromosome Location	chr8:129820778-129820779
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10092273	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10094688	0.88[EUR][1000 genomes]
rs10102013	0.87[ASN][1000 genomes]
rs10103995	0.88[EUR][1000 genomes]
rs10447999	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10956447	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10956448	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10956449	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10956450	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11782234	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11785020	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12547429	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12550594	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12674882	0.90[ASN][1000 genomes]
rs12675522	0.89[EUR][1000 genomes]
rs12676288	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12677710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12678715	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12679405	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12680246	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13276570	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13277797	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13281755	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1356763	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1441992	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1519839	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1519853	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1519854	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1519855	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17239733	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17240568	0.87[EUR][1000 genomes]
rs17240784	0.89[EUR][1000 genomes]
rs17241323	1.00[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17819852	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1879165	0.89[EUR][1000 genomes]
rs2056313	0.89[EUR][1000 genomes]
rs2894458	0.88[EUR][1000 genomes]
rs35526947	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35902990	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3847140	0.85[EUR][1000 genomes]
rs4593504	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4733652	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4733656	0.89[EUR][1000 genomes]
rs4733657	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6995598	0.89[EUR][1000 genomes]
rs6996154	0.89[EUR][1000 genomes]
rs6999288	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7831440	0.89[EUR][1000 genomes]
rs7842437	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs871502	0.89[EUR][1000 genomes]
rs9656973	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129807000-129820800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:129820000-129825600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:129820600-129821800	Enhancers	Stomach Mucosa	stomach

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