Variant report

Variant	rs12680246
Chromosome Location	chr8:129893608-129893609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:129890413..129893226-chr8:129893231..129894881,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10092273	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10094688	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10103995	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10447999	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10956447	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10956448	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10956449	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956450	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11782234	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11785020	0.84[EUR][1000 genomes]
rs12547429	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12550594	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12675522	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12676288	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12677710	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12677712	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12678715	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12679405	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13276570	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13277797	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13281755	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1356763	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1441992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519839	0.84[EUR][1000 genomes]
rs1519853	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1519854	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1519855	0.81[EUR][1000 genomes]
rs17239733	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17240568	0.95[EUR][1000 genomes]
rs17240784	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17241323	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17819852	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1879165	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2056313	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2894458	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35902990	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4593504	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4733652	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4733656	0.95[EUR][1000 genomes]
rs4733657	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6995598	0.95[EUR][1000 genomes]
rs6996154	0.95[EUR][1000 genomes]
rs6999288	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7831440	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7842437	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs871502	0.95[EUR][1000 genomes]
rs9656973	0.82[EUR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129881600-129894200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:129887200-129894000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:129887400-129894800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:129887400-129896000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:129890200-129893800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:129890400-129895800	Weak transcription	NHLF	lung
7	chr8:129890600-129894200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:129890800-129894200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:129891800-129893800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr8:129893000-129897000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:129893000-129897000	Enhancers	NHDF-Ad	bronchial
12	chr8:129893600-129896600	Enhancers	Muscle Satellite Cultured Cells	--

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