Variant report

Variant	rs1519855
Chromosome Location	chr8:129801347-129801348
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10092273	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10094688	0.82[EUR][1000 genomes]
rs10102013	1.00[ASN][1000 genomes]
rs10103995	0.82[EUR][1000 genomes]
rs10956447	0.85[EUR][1000 genomes]
rs10956448	0.85[EUR][1000 genomes]
rs10956449	0.81[EUR][1000 genomes]
rs11785020	0.89[EUR][1000 genomes]
rs12547429	0.84[EUR][1000 genomes]
rs12550594	0.81[EUR][1000 genomes]
rs12674882	0.97[ASN][1000 genomes]
rs12675522	0.83[EUR][1000 genomes]
rs12676288	0.85[EUR][1000 genomes]
rs12677710	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12677712	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12679405	0.83[EUR][1000 genomes]
rs12680246	0.81[EUR][1000 genomes]
rs13276570	0.81[EUR][1000 genomes]
rs13277797	0.81[EUR][1000 genomes]
rs13281755	0.86[EUR][1000 genomes]
rs1356763	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1441992	0.80[EUR][1000 genomes]
rs1519839	0.89[EUR][1000 genomes]
rs1519853	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519854	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17239733	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17240568	0.81[EUR][1000 genomes]
rs17240784	0.83[EUR][1000 genomes]
rs17241323	1.00[CEU][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs1879165	0.83[EUR][1000 genomes]
rs2056313	0.83[EUR][1000 genomes]
rs2894458	0.82[EUR][1000 genomes]
rs35526947	0.82[EUR][1000 genomes]
rs4593504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4733652	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4733656	0.83[EUR][1000 genomes]
rs6995598	0.83[EUR][1000 genomes]
rs6996154	0.83[EUR][1000 genomes]
rs6999288	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7831440	0.83[EUR][1000 genomes]
rs7842437	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs871502	0.83[EUR][1000 genomes]
rs9656973	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129784000-129809800	Weak transcription	Dnd41	blood
2	chr8:129797600-129801400	Enhancers	NHDF-Ad	bronchial
3	chr8:129798400-129801800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:129798600-129802400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:129798800-129801400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:129798800-129801400	Enhancers	NHEK	skin
7	chr8:129799200-129801400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr8:129801000-129801400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:129801000-129805200	Weak transcription	HUVEC	blood vessel
10	chr8:129801000-129806000	Weak transcription	HSMM	muscle
11	chr8:129801000-129806600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:129801200-129806000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr8:129801200-129806600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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