The 2.0 version of rSNPBase

Variant report

Variant rs72472347
Chromosome Location chr1:220980232-220980233
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:74 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220961000-220982200 Weak transcription Brain Substantia Nigra brain
2 chr1:220961400-220983800 Weak transcription Esophagus oesophagus
3 chr1:220961600-220983600 Weak transcription Pancreas Pancrea
4 chr1:220961800-220981400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
5 chr1:220961800-220981600 Weak transcription Fetal Muscle Trunk muscle
6 chr1:220961800-220983800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
7 chr1:220965200-220985400 Weak transcription Aorta Aorta
8 chr1:220965400-220982200 Weak transcription Brain Inferior Temporal Lobe brain
9 chr1:220965600-220983600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr1:220965800-220983800 Weak transcription Fetal Lung lung
11 chr1:220966400-220996000 Strong transcription Monocytes-CD14+_RO01746 blood
12 chr1:220966600-220982400 Strong transcription Primary monocytes fromperipheralblood blood
13 chr1:220966800-220985200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
14 chr1:220967600-220983800 Weak transcription Psoas Muscle Psoas
15 chr1:220970400-220981600 Weak transcription ES-I3 Cell Line embryonic stem cell
16 chr1:220970400-220985800 Weak transcription Duodenum Mucosa Duodenum
17 chr1:220970800-220981600 Weak transcription Brain Hippocampus Middle brain
18 chr1:220971200-220986400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
19 chr1:220971200-220991400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
20 chr1:220971600-220980600 Strong transcription Fetal Intestine Small intestine
21 chr1:220972200-220983800 Weak transcription Rectal Mucosa Donor 31 rectum
22 chr1:220972200-220984000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
23 chr1:220972800-220987600 Weak transcription Fetal Brain Male brain
24 chr1:220973200-220981800 Weak transcription Left Ventricle heart
25 chr1:220973200-220983800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr1:220973200-220991800 Weak transcription Brain Anterior Caudate brain
27 chr1:220973400-221000200 Weak transcription Placenta Placenta
28 chr1:220973600-220983800 Weak transcription Rectal Mucosa Donor 29 rectum
29 chr1:220974000-220992800 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr1:220974200-220986800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr1:220974200-220991200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
32 chr1:220975200-220992000 Weak transcription Brain Germinal Matrix brain
33 chr1:220975400-220981800 Weak transcription Right Ventricle heart
34 chr1:220975600-220981200 Weak transcription Breast Myoepithelial Primary Cells Breast
35 chr1:220975600-220981800 Weak transcription Fetal Adrenal Gland Adrenal Gland
36 chr1:220975600-220983800 Weak transcription Skeletal Muscle Male skeletal muscle
37 chr1:220975600-220983800 Weak transcription Skeletal Muscle Female skeletal muscle
38 chr1:220975600-220988000 Weak transcription Brain Angular Gyrus brain
39 chr1:220975600-220991400 Weak transcription Brain Cingulate Gyrus brain
40 chr1:220975800-220983800 Weak transcription Lung lung
41 chr1:220976200-220981400 Weak transcription Fetal Heart heart
42 chr1:220976200-220983600 Weak transcription Primary T regulatory cells fromperipheralblood blood
43 chr1:220976400-220988000 Weak transcription Spleen Spleen
44 chr1:220977400-220982400 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
45 chr1:220977600-220983800 Weak transcription Colonic Mucosa Colon
46 chr1:220977800-220981600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr1:220977800-220982000 Weak transcription Stomach Smooth Muscle stomach
48 chr1:220978200-220980400 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
49 chr1:220978200-220980400 Strong transcription Liver Liver
50 chr1:220978200-220980600 Strong transcription HUES48 Cell Line embryonic stem cell

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Last update: Aug 31, 2015