Variant report

Variant	rs7253182
Chromosome Location	chr19:52312091-52312092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:84)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:84 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr19:52311898-52312227	T-47D	breast:	n/a	n/a
2	FOXA1	chr19:52311905-52312172	HepG2	liver:	n/a	n/a
3	CEBPB	chr19:52311929-52312157	K562	blood:	n/a	n/a
4	FOS	chr19:52311986-52312234	MCF10A-Er-Src	breast:	n/a	n/a
5	CTCF	chr19:52312000-52312150	HMEC	breast:	n/a	n/a
6	CTCF	chr19:52312000-52312150	AG09309	skin:	n/a	n/a
7	CTCF	chr19:52311960-52312110	AG09319	gingival:	n/a	n/a
8	CTCF	chr19:52312040-52312190	HCM	heart:	n/a	n/a
9	CTCF	chr19:52311980-52312130	AG10803	skin:	n/a	n/a
10	FOXA1	chr19:52311837-52312240	T-47D	breast:	n/a	n/a
11	CTCF	chr19:52311980-52312130	HEK293	kidney:	n/a	n/a
12	STAT3	chr19:52311919-52312156	MCF10A-Er-Src	breast:	n/a	n/a
13	CTCF	chr19:52311960-52312110	BE2_C	brain:	n/a	n/a
14	CTCF	chr19:52311980-52312130	HCPEpiC	choroid plexus:	n/a	n/a
15	CTCF	chr19:52312060-52312210	NHDF-neo	bronchial:	n/a	n/a
16	CTCF	chr19:52311980-52312130	HepG2	liver:	n/a	n/a
17	CTCF	chr19:52312000-52312150	HCFaa	heart:	n/a	n/a
18	CTCF	chr19:52311995-52312147	LNCaP	prostate:	n/a	n/a
19	CTCF	chr19:52311917-52312129	IMR90	lung:	n/a	n/a
20	CTCF	chr19:52311960-52312110	HPAF	blood vessel:	n/a	n/a
21	IRF1	chr19:52311654-52312179	K562	blood:	n/a	n/a
22	CTCF	chr19:52311961-52312133	SK-N-SH_RA	brain:	n/a	n/a
23	CTCF	chr19:52311980-52312130	AoAF	blood vessel:	n/a	n/a
24	TEAD4	chr19:52311835-52312212	K562	blood:	n/a	n/a
25	CTCF	chr19:52311980-52312130	HPAF	blood vessel:	n/a	n/a
26	RCOR1	chr19:52311851-52312214	K562	blood:	n/a	n/a
27	RAD21	chr19:52311885-52312231	SK-N-SH_RA	brain:	n/a	n/a
28	CTCF	chr19:52312060-52312210	NHEK	skin:	n/a	n/a
29	CTCF	chr19:52311980-52312130	AG09319	gingival:	n/a	n/a
30	CTCF	chr19:52311870-52312355	SK-N-SH	brain:	n/a	n/a
31	RAD21	chr19:52311854-52312203	SK-N-SH_RA	brain:	n/a	n/a
32	CTCF	chr19:52311842-52312193	K562	blood:	n/a	n/a
33	RAD21	chr19:52311931-52312127	HepG2	liver:	n/a	n/a
34	RAD21	chr19:52311888-52312127	ECC-1	luminal epithelium:	n/a	n/a
35	CTCF	chr19:52312000-52312150	BE2_C	brain:	n/a	n/a
36	SMC3	chr19:52311882-52312165	K562	blood:	n/a	n/a
37	RAD21	chr19:52311975-52312150	IMR90	lung:	n/a	n/a
38	FOS	chr19:52311957-52312306	MCF10A-Er-Src	breast:	n/a	n/a
39	STAT3	chr19:52312020-52312220	MCF10A-Er-Src	breast:	n/a	n/a
40	UBTF	chr19:52312010-52312156	K562	blood:	n/a	n/a
41	CTCF	chr19:52312011-52312100	MCF-7	breast:	n/a	n/a
42	FOXA1	chr19:52311907-52312209	HepG2	liver:	n/a	n/a
43	JUN	chr19:52311952-52312198	K562	blood:	n/a	n/a
44	CTCF	chr19:52311960-52312110	HEK293	kidney:	n/a	n/a
45	CTCF	chr19:52312020-52312170	HMEC	breast:	n/a	n/a
46	CTCF	chr19:52311960-52312110	SK-N-SH_RA	brain:	n/a	n/a
47	CTCF	chr19:52311960-52312110	HFF	foreskin:	n/a	n/a
48	IRF1	chr19:52311464-52312177	K562	blood:	n/a	n/a
49	CTCF	chr19:52311818-52312158	MCF-7	breast:	n/a	n/a
50	CTCF	chr19:52311950-52312180	Gliobla	brain:	n/a	n/a

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:52310543..52312207-chr19:52772236..52773979,2	MCF-7	breast:
2	chr19:52311117..52313803-chr19:52333610..52335464,2	MCF-7	breast:
3	chr19:52287685..52291319-chr19:52309738..52312774,4	MCF-7	breast:
4	chr19:52199590..52202022-chr19:52311266..52313737,2	MCF-7	breast:
5	chr19:52160319..52160911-chr19:52311474..52312517,3	K562	blood:
6	chr19:52110881..52111404-chr19:52311887..52312611,2	K562	blood:
7	chr19:52216085..52216905-chr19:52311568..52312097,3	MCF-7	breast:
8	chr19:52286428..52287255-chr19:52311675..52312485,2	K562	blood:
9	chr19:52297423..52299062-chr19:52310490..52313161,2	MCF-7	breast:
10	chr19:52218179..52219711-chr19:52309357..52312195,2	MCF-7	breast:
11	chr19:52213445..52215561-chr19:52311102..52312961,2	MCF-7	breast:
12	chr19:52279714..52282274-chr19:52309726..52312482,2	MCF-7	breast:

No data

Variant related genes	Relation type
FPR1	TF binding region
ENSG00000187474	Chromatin interaction
ENSG00000196214	Chromatin interaction

Extended variants
information (count: 124 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10404279	0.88[ASN][1000 genomes]
rs10405314	0.92[ASN][1000 genomes]
rs10406732	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10406893	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10411054	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10412377	0.85[ASN][1000 genomes]
rs10420568	0.92[ASN][1000 genomes]
rs10420840	0.89[ASN][1000 genomes]
rs10422421	0.92[ASN][1000 genomes]
rs10422606	0.92[ASN][1000 genomes]
rs10500309	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10853846	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11666614	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11878589	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12151116	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12459256	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12460012	0.92[ASN][1000 genomes]
rs12462062	0.92[ASN][1000 genomes]
rs12462109	0.92[ASN][1000 genomes]
rs13346095	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13346104	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1468641	0.92[ASN][1000 genomes]
rs1468642	0.82[ASN][1000 genomes]
rs17761960	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2109656	0.92[ASN][1000 genomes]
rs2109658	0.92[ASN][1000 genomes]
rs2159655	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28800315	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2903546	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3948650	0.92[ASN][1000 genomes]
rs4801897	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4801898	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4802869	0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4802871	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4802872	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4802873	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4802874	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4802875	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4802876	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4802877	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4802884	0.96[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55843033	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55883913	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55899451	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56083320	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56177367	0.92[ASN][1000 genomes]
rs61681419	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs721889	0.92[ASN][1000 genomes]
rs721890	0.92[ASN][1000 genomes]
rs7247613	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7248523	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7250063	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7250773	0.81[GIH][hapmap];0.87[JPT][hapmap];0.80[EUR][1000 genomes]
rs7252487	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7252508	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7252671	0.92[ASN][1000 genomes]
rs7252805	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7253924	0.96[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7259815	0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs763782	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8099997	0.96[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8105497	0.82[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs8109098	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8111469	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:60 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758767	chr19:51991896-52604625	Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	578 gene(s)	inside rSNPs	diseases
2	nsv1056825	chr19:52103914-52359815	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	541 gene(s)	inside rSNPs	diseases
3	nsv544053	chr19:52103914-52359815	ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	541 gene(s)	inside rSNPs	diseases
4	nsv1065410	chr19:52103914-52889530	Genic enhancers Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	596 gene(s)	inside rSNPs	diseases
5	nsv915725	chr19:52184488-52439676	Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	541 gene(s)	inside rSNPs	diseases
6	nsv1059148	chr19:52211749-52359815	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv1057279	chr19:52225513-52350896	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv524403	chr19:52225767-52356791	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv470151	chr19:52225767-52359169	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv458733	chr19:52225767-52359983	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
11	nsv579997	chr19:52225767-52359983	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
12	nsv1067301	chr19:52227027-52350054	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
13	nsv1065078	chr19:52227916-52350896	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
14	esv34938	chr19:52227916-52630935	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
15	nsv1063136	chr19:52231449-52350896	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
16	nsv1065599	chr19:52231504-52359815	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
17	nsv1061029	chr19:52249900-52614747	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
18	esv2757699	chr19:52259571-52604625	Active TSS ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
19	esv2751797	chr19:52259588-52604625	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
20	nsv1061100	chr19:52259839-52617390	Strong transcription Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
21	nsv1060519	chr19:52270087-52628611	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
22	nsv579998	chr19:52270942-52613105	Strong transcription Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
23	nsv1056146	chr19:52271018-52617390	Weak transcription Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
24	nsv1057485	chr19:52271309-52614747	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
25	nsv870043	chr19:52271348-52619860	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
26	nsv534202	chr19:52272356-52627403	Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
27	nsv1059263	chr19:52273257-52607771	ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
28	nsv1057290	chr19:52273257-52614747	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
29	nsv1064732	chr19:52273257-52617390	ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
30	nsv1059924	chr19:52273257-52628611	Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
31	nsv1057217	chr19:52283498-52617132	Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
32	nsv1062154	chr19:52283498-52617390	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
33	nsv1060988	chr19:52283498-52621644	Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
34	nsv1058292	chr19:52284671-52614747	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
35	nsv1063940	chr19:52284671-52617390	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
36	esv2751798	chr19:52285788-52604625	ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
37	esv2751799	chr19:52285788-52604625	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
38	esv2751800	chr19:52285788-52604625	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
39	esv2751801	chr19:52285788-52604625	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
40	esv34502	chr19:52285829-52604625	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
41	nsv458734	chr19:52287452-52601399	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
42	nsv579999	chr19:52287452-52601399	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
43	nsv458735	chr19:52287452-52607765	Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
44	nsv458736	chr19:52287452-52607765	ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
45	nsv580000	chr19:52287452-52607765	Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
46	nsv1055523	chr19:52288763-52578312	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
47	nsv544055	chr19:52288763-52578312	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
48	nsv916346	chr19:52288798-52578302	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
49	nsv1065600	chr19:52295063-52500079	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
50	nsv544056	chr19:52295063-52500079	Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7253182	LILRA3	cis	parietal	SCAN
rs7253182	NLRP9	cis	cerebellum	SCAN
rs7253182	ZNF784	cis	parietal	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:52303600-52325400	Weak transcription	Brain Hippocampus Middle	brain
2	chr19:52306400-52316600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr19:52307000-52315200	Enhancers	Placenta	Placenta
4	chr19:52307200-52313000	Weak transcription	Adipose Nuclei	Adipose
5	chr19:52308000-52312400	Enhancers	HepG2	liver
6	chr19:52308000-52315200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr19:52308400-52313000	Weak transcription	Right Atrium	heart
8	chr19:52309200-52313000	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr19:52309800-52312200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr19:52310000-52312400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr19:52310000-52313200	Enhancers	HMEC	breast
12	chr19:52310200-52312200	Enhancers	NHEK	skin
13	chr19:52310600-52312400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr19:52310600-52312400	Enhancers	K562	blood
15	chr19:52310600-52313800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr19:52310800-52312200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr19:52310800-52312200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr19:52310800-52313000	Weak transcription	Right Ventricle	heart
19	chr19:52310800-52314800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr19:52311000-52313800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr19:52311600-52312200	Enhancers	Dnd41	blood
22	chr19:52311800-52312200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr19:52311800-52313000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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