Variant report

Variant	rs72570336
Chromosome Location	chr6:151050883-151050884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:151040854..151046564-chr6:151048861..151051193,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120278	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11965555	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3734408	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3734409	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3734410	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3734413	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58164449	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72570328	0.81[AMR][1000 genomes]
rs72570331	0.81[AMR][1000 genomes]
rs72570332	0.81[AMR][1000 genomes]
rs72570334	0.81[AMR][1000 genomes]
rs7454101	0.83[EUR][1000 genomes]
rs9918380	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1019919	chr6:151028969-151161789	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv538474	chr6:151028969-151161789	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:151035000-151066400	Weak transcription	Right Ventricle	heart
2	chr6:151039000-151058800	Weak transcription	Gastric	stomach
3	chr6:151040000-151055800	Weak transcription	HUVEC	blood vessel
4	chr6:151042400-151054400	Weak transcription	Placenta	Placenta
5	chr6:151042400-151074800	Weak transcription	Fetal Intestine Small	intestine
6	chr6:151042600-151085400	Weak transcription	Esophagus	oesophagus
7	chr6:151042800-151054800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr6:151043000-151052000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:151044400-151055400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:151045000-151054800	Weak transcription	Fetal Intestine Large	intestine
11	chr6:151045000-151055200	Weak transcription	Fetal Kidney	kidney
12	chr6:151045200-151051600	Weak transcription	Spleen	Spleen
13	chr6:151045200-151054800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr6:151045200-151054800	Weak transcription	Ovary	ovary
15	chr6:151045200-151061000	Weak transcription	Brain Anterior Caudate	brain
16	chr6:151045400-151053800	Weak transcription	Fetal Stomach	stomach
17	chr6:151045400-151054800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:151045400-151059400	Weak transcription	Fetal Lung	lung
19	chr6:151046200-151055200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:151046800-151054800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:151046800-151061200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:151047000-151061000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr6:151047400-151054800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr6:151047800-151052200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr6:151048200-151054600	Strong transcription	Primary B cells from cord blood	blood
26	chr6:151048400-151054800	Weak transcription	Colonic Mucosa	Colon
27	chr6:151048800-151054600	Weak transcription	Primary T cells from cord blood	blood
28	chr6:151049000-151059400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr6:151049200-151060400	Weak transcription	Brain Substantia Nigra	brain
30	chr6:151050000-151051000	Enhancers	Thymus	Thymus
31	chr6:151050400-151051000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:151050400-151051000	Enhancers	Adipose Nuclei	Adipose
33	chr6:151050400-151051000	Enhancers	Fetal Muscle Leg	muscle
34	chr6:151050400-151051000	Enhancers	Psoas Muscle	Psoas
35	chr6:151050400-151051200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr6:151050600-151051200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:151050600-151051600	Weak transcription	Lung	lung
38	chr6:151050600-151052000	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr6:151050600-151052600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:151050600-151053600	Weak transcription	Fetal Thymus	thymus
41	chr6:151050600-151054800	Weak transcription	Left Ventricle	heart
42	chr6:151050600-151058400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr6:151050800-151051400	Enhancers	Primary B cells from peripheral blood	blood
44	chr6:151050800-151054800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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