The 2.0 version of rSNPBase

Variant report

Variant rs7258259
Chromosome Location chr19:18844176-18844177
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:88 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:18812000-18844200 Weak transcription Fetal Kidney kidney
2 chr19:18820400-18847200 Weak transcription Rectal Mucosa Donor 29 rectum
3 chr19:18820600-18846600 Weak transcription Esophagus oesophagus
4 chr19:18821200-18860600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
5 chr19:18821200-18861000 Weak transcription Primary T helper cells fromperipheralblood blood
6 chr19:18821200-18864800 Weak transcription Primary T helper cells PMA-I stimulated --
7 chr19:18824200-18846600 Weak transcription Pancreas Pancrea
8 chr19:18824600-18847800 Weak transcription Liver Liver
9 chr19:18825000-18845600 Weak transcription Primary B cells from cord blood blood
10 chr19:18827000-18846200 Weak transcription Thymus Thymus
11 chr19:18827600-18860600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
12 chr19:18828200-18845600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
13 chr19:18828800-18850400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr19:18829200-18860000 Weak transcription Primary monocytes fromperipheralblood blood
15 chr19:18829200-18861400 Weak transcription Primary T cells fromperipheralblood blood
16 chr19:18830400-18845600 Weak transcription Brain Hippocampus Middle brain
17 chr19:18830400-18845800 Weak transcription Brain Cingulate Gyrus brain
18 chr19:18830800-18845800 Weak transcription Brain Inferior Temporal Lobe brain
19 chr19:18833600-18844200 Weak transcription HSMM muscle
20 chr19:18833800-18853400 Weak transcription Primary T cells from cord blood blood
21 chr19:18833800-18860400 Weak transcription Primary T regulatory cells fromperipheralblood blood
22 chr19:18833800-18860800 Weak transcription Primary T helper naive cells fromperipheralblood blood
23 chr19:18834600-18845800 Weak transcription Brain Anterior Caudate brain
24 chr19:18835000-18860600 Weak transcription Primary B cells from peripheral blood blood
25 chr19:18835200-18853200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
26 chr19:18836800-18845200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
27 chr19:18841000-18844800 Genic enhancers Fetal Intestine Small intestine
28 chr19:18841000-18845600 Enhancers Fetal Intestine Large intestine
29 chr19:18841200-18845000 Enhancers HepG2 liver
30 chr19:18841200-18852000 Weak transcription Small Intestine intestine
31 chr19:18841600-18845800 Weak transcription Spleen Spleen
32 chr19:18842000-18848400 Enhancers Fetal Muscle Leg muscle
33 chr19:18842200-18853400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
34 chr19:18842600-18845800 Weak transcription Fetal Adrenal Gland Adrenal Gland
35 chr19:18842600-18851000 Weak transcription Sigmoid Colon Sigmoid Colon
36 chr19:18842600-18853400 Weak transcription HUES6 Cell Line embryonic stem cell
37 chr19:18842800-18845400 Weak transcription Breast Myoepithelial Primary Cells Breast
38 chr19:18842800-18845600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
39 chr19:18842800-18846400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
40 chr19:18842800-18856600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
41 chr19:18842800-18861000 Weak transcription Primary hematopoietic stem cells short term culture blood
42 chr19:18843000-18844400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
43 chr19:18843000-18845200 Enhancers Fetal Muscle Trunk muscle
44 chr19:18843000-18845400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
45 chr19:18843000-18860600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr19:18843400-18844400 Flanking Active TSS Fetal Heart heart
47 chr19:18843400-18844600 Weak transcription K562 blood
48 chr19:18843400-18845400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
49 chr19:18843600-18844400 Enhancers Cortex derived primary cultured neurospheres brain
50 chr19:18843600-18844400 Enhancers Stomach Mucosa stomach

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Last update: Aug 31, 2015