Variant report

Variant	rs72656892
Chromosome Location	chr4:149307826-149307827
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs36127895	1.00[AMR][1000 genomes]
rs56260605	1.00[AMR][1000 genomes]
rs59361362	1.00[AMR][1000 genomes]
rs61086912	1.00[AMR][1000 genomes]
rs72653854	1.00[AMR][1000 genomes]
rs72655291	1.00[AMR][1000 genomes]
rs72656817	1.00[AMR][1000 genomes]
rs72656820	1.00[AMR][1000 genomes]
rs73853789	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv530433	chr4:149277637-149669181	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv880246	chr4:149287807-149311728	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv980434	chr4:149300843-149308003	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149292200-149315000	Weak transcription	Fetal Muscle Leg	muscle
2	chr4:149297800-149350000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:149298400-149311600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:149299000-149329000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr4:149299200-149318400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr4:149300600-149310000	Weak transcription	Left Ventricle	heart
7	chr4:149306200-149308200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr4:149306200-149309800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr4:149306200-149316600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr4:149306600-149313600	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr4:149307200-149314400	Weak transcription	Psoas Muscle	Psoas
12	chr4:149307200-149318200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr4:149307200-149318200	Weak transcription	Pancreas	Pancrea
14	chr4:149307400-149318200	Weak transcription	Ovary	ovary
15	chr4:149307600-149315000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr4:149307600-149316600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr4:149307600-149336600	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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