Variant report

Variant	rs73853789
Chromosome Location	chr4:149105255-149105256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17024320	1.00[AMR][1000 genomes]
rs36127895	1.00[AMR][1000 genomes]
rs56260605	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59361362	1.00[AMR][1000 genomes]
rs59721652	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61086912	1.00[AMR][1000 genomes]
rs6839547	1.00[AMR][1000 genomes]
rs72651900	1.00[AMR][1000 genomes]
rs72653854	1.00[AMR][1000 genomes]
rs72655291	1.00[AMR][1000 genomes]
rs72656817	1.00[AMR][1000 genomes]
rs72656820	1.00[AMR][1000 genomes]
rs72656892	1.00[AMR][1000 genomes]
rs73853782	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853784	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73855932	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032794	chr4:149046598-149135489	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537295	chr4:149046598-149135489	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149084000-149106200	Weak transcription	Lung	lung
2	chr4:149087600-149123400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr4:149088000-149113200	Weak transcription	Adipose Nuclei	Adipose
4	chr4:149088000-149113600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr4:149088400-149113000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr4:149088400-149122800	Weak transcription	Brain Angular Gyrus	brain
7	chr4:149092400-149113400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr4:149094400-149113200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr4:149094800-149113200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:149094800-149124600	Weak transcription	Aorta	Aorta
11	chr4:149095200-149113600	Weak transcription	Pancreas	Pancrea
12	chr4:149099000-149116600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr4:149099200-149123600	Weak transcription	Brain Anterior Caudate	brain
14	chr4:149102200-149113400	Weak transcription	Gastric	stomach
15	chr4:149102200-149113400	Weak transcription	Right Ventricle	heart
16	chr4:149102400-149114000	Weak transcription	Ovary	ovary
17	chr4:149102600-149113200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr4:149103000-149114200	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr4:149103200-149113200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr4:149103400-149123200	Weak transcription	Small Intestine	intestine
21	chr4:149103800-149108400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr4:149104000-149108800	Weak transcription	Liver	Liver
23	chr4:149104000-149113200	Weak transcription	Fetal Intestine Small	intestine
24	chr4:149104000-149114400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr4:149104800-149105400	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr4:149105000-149114800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr4:149105200-149106200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr4:149105200-149113200	Weak transcription	Fetal Muscle Leg	muscle
29	chr4:149105200-149123600	Weak transcription	Brain Hippocampus Middle	brain

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