Variant report

Variant	rs73853784
Chromosome Location	chr4:149096037-149096038
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17024320	1.00[AMR][1000 genomes]
rs36127895	1.00[AMR][1000 genomes]
rs56260605	1.00[AMR][1000 genomes]
rs59361362	1.00[AMR][1000 genomes]
rs59721652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61086912	1.00[AMR][1000 genomes]
rs61683011	0.82[AFR][1000 genomes]
rs6839547	1.00[AMR][1000 genomes]
rs72651900	1.00[AMR][1000 genomes]
rs72653854	1.00[AMR][1000 genomes]
rs72655291	1.00[AMR][1000 genomes]
rs72656817	1.00[AMR][1000 genomes]
rs72656820	1.00[AMR][1000 genomes]
rs73853763	0.82[AFR][1000 genomes]
rs73853765	0.82[AFR][1000 genomes]
rs73853782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853789	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73855932	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032794	chr4:149046598-149135489	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537295	chr4:149046598-149135489	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149045600-149104800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr4:149068000-149097400	Weak transcription	Spleen	Spleen
3	chr4:149084000-149106200	Weak transcription	Lung	lung
4	chr4:149087600-149123400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr4:149088000-149113200	Weak transcription	Adipose Nuclei	Adipose
6	chr4:149088000-149113600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:149088400-149113000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr4:149088400-149122800	Weak transcription	Brain Angular Gyrus	brain
9	chr4:149092400-149113400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr4:149093000-149102000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr4:149093000-149102000	Weak transcription	Left Ventricle	heart
12	chr4:149094400-149113200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr4:149094600-149096200	Weak transcription	Brain Hippocampus Middle	brain
14	chr4:149094600-149099800	Weak transcription	Small Intestine	intestine
15	chr4:149094800-149113200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr4:149094800-149124600	Weak transcription	Aorta	Aorta
17	chr4:149095000-149096600	Enhancers	Brain Substantia Nigra	brain
18	chr4:149095000-149101200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr4:149095200-149098600	Weak transcription	Brain Anterior Caudate	brain
20	chr4:149095200-149113600	Weak transcription	Pancreas	Pancrea
21	chr4:149095800-149102000	Weak transcription	Psoas Muscle	Psoas
22	chr4:149096000-149098600	Weak transcription	Fetal Stomach	stomach
23	chr4:149096000-149102000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr4:149096000-149102600	Weak transcription	Rectal Mucosa Donor 31	rectum

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