Variant report

Variant	rs61086912
Chromosome Location	chr4:149252265-149252266
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs36127895	1.00[AMR][1000 genomes]
rs56260605	1.00[AMR][1000 genomes]
rs59361362	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59721652	1.00[AMR][1000 genomes]
rs72651900	1.00[AMR][1000 genomes]
rs72653854	1.00[AMR][1000 genomes]
rs72655291	1.00[AMR][1000 genomes]
rs72656817	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72656820	1.00[AMR][1000 genomes]
rs72656825	0.95[AFR][1000 genomes]
rs72656892	1.00[AMR][1000 genomes]
rs73853782	1.00[AMR][1000 genomes]
rs73853784	1.00[AMR][1000 genomes]
rs73853789	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1028105	chr4:149199913-149284620	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537297	chr4:149199913-149284620	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1019350	chr4:149232430-149282117	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149235000-149266800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr4:149244400-149257600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:149245400-149257200	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr4:149248400-149252800	Enhancers	Fetal Heart	heart
5	chr4:149249400-149252800	Weak transcription	Lung	lung
6	chr4:149249400-149261400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:149249400-149263200	Weak transcription	Right Atrium	heart
8	chr4:149249400-149271200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr4:149250000-149253800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr4:149251200-149252800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr4:149251200-149253000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr4:149251400-149252800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr4:149251400-149253000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr4:149251800-149253000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr4:149251800-149253600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr4:149251800-149265000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr4:149252000-149252600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr4:149252000-149267000	Weak transcription	Right Ventricle	heart
19	chr4:149252200-149253000	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr4:149252200-149253800	Weak transcription	Psoas Muscle	Psoas
21	chr4:149252200-149257200	Weak transcription	Left Ventricle	heart
22	chr4:149252200-149257600	Weak transcription	Aorta	Aorta

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