Variant report

Variant	rs72653854
Chromosome Location	chr4:149115800-149115801
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17024320	1.00[AMR][1000 genomes]
rs36127895	1.00[AMR][1000 genomes]
rs56260605	1.00[AMR][1000 genomes]
rs59361362	1.00[AMR][1000 genomes]
rs59721652	1.00[AMR][1000 genomes]
rs61086912	1.00[AMR][1000 genomes]
rs6839547	1.00[AMR][1000 genomes]
rs72651900	1.00[AMR][1000 genomes]
rs72653850	0.90[AFR][1000 genomes]
rs72655291	1.00[AMR][1000 genomes]
rs72656817	1.00[AMR][1000 genomes]
rs72656820	1.00[AMR][1000 genomes]
rs72656892	1.00[AMR][1000 genomes]
rs73853782	1.00[AMR][1000 genomes]
rs73853784	1.00[AMR][1000 genomes]
rs73853789	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032794	chr4:149046598-149135489	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537295	chr4:149046598-149135489	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149087600-149123400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr4:149088400-149122800	Weak transcription	Brain Angular Gyrus	brain
3	chr4:149094800-149124600	Weak transcription	Aorta	Aorta
4	chr4:149099000-149116600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr4:149099200-149123600	Weak transcription	Brain Anterior Caudate	brain
6	chr4:149103400-149123200	Weak transcription	Small Intestine	intestine
7	chr4:149105200-149123600	Weak transcription	Brain Hippocampus Middle	brain
8	chr4:149109400-149116600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr4:149111000-149118600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr4:149111800-149123400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr4:149112400-149116800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr4:149112400-149137400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr4:149113000-149123400	Weak transcription	Psoas Muscle	Psoas
14	chr4:149113200-149115800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr4:149113200-149115800	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr4:149113200-149116000	Strong transcription	Rectal Mucosa Donor 31	rectum
17	chr4:149113200-149116800	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr4:149113200-149117200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr4:149113600-149116000	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr4:149114000-149117400	Weak transcription	Primary B cells from peripheral blood	blood
21	chr4:149114000-149123200	Weak transcription	Right Ventricle	heart
22	chr4:149114200-149116400	Strong transcription	Primary T helper cells PMA-I stimulated	--
23	chr4:149114200-149123200	Weak transcription	Right Atrium	heart
24	chr4:149114200-149131400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr4:149114400-149116800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr4:149114400-149123200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr4:149114400-149123400	Weak transcription	Fetal Muscle Leg	muscle
28	chr4:149114400-149123400	Weak transcription	Left Ventricle	heart
29	chr4:149114600-149116600	Weak transcription	Gastric	stomach
30	chr4:149114600-149117000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr4:149114600-149122200	Weak transcription	Lung	lung
32	chr4:149114600-149123400	Weak transcription	Ovary	ovary
33	chr4:149114600-149125000	Weak transcription	Fetal Intestine Small	intestine
34	chr4:149114800-149116400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr4:149114800-149117400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr4:149114800-149119000	Weak transcription	Pancreas	Pancrea
37	chr4:149115400-149117200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr4:149115400-149117200	Weak transcription	Colonic Mucosa	Colon
39	chr4:149115400-149118400	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr4:149115400-149123600	Weak transcription	Fetal Kidney	kidney
41	chr4:149115400-149123800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr4:149115600-149116400	Enhancers	Liver	Liver
43	chr4:149115600-149123400	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr4:149115600-149123600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr4:149115600-149123600	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr4:149115600-149124200	Weak transcription	Adipose Nuclei	Adipose
47	chr4:149115600-149125000	Weak transcription	Duodenum Mucosa	Duodenum
48	chr4:149115800-149124600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr4:149115800-149137400	Weak transcription	Rectal Mucosa Donor 29	rectum

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