Variant report

Variant	rs72667301
Chromosome Location	chr8:104014573-104014574
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AZIN1-2	chr8:104014108-104014651	NONHSAT128138
2	lnc-KB-1507C5.2.1-2	chr8:104011293-104014653	NONHSAT128145

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1512351	0.90[EUR][1000 genomes]
rs17199777	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17200931	0.90[EUR][1000 genomes]
rs3808549	0.90[EUR][1000 genomes]
rs3808551	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55635754	0.90[EUR][1000 genomes]
rs55649874	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55844983	0.90[EUR][1000 genomes]
rs56224531	0.90[EUR][1000 genomes]
rs56370378	0.90[EUR][1000 genomes]
rs57059899	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57205128	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71292768	0.83[ASN][1000 genomes]
rs72667277	0.93[EUR][1000 genomes]
rs72667278	0.96[EUR][1000 genomes]
rs72667279	0.96[EUR][1000 genomes]
rs72667281	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72667282	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72667289	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72667290	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72667292	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72669305	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669319	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72669327	0.93[EUR][1000 genomes]
rs72669334	0.90[EUR][1000 genomes]
rs72669337	0.87[EUR][1000 genomes]
rs72669342	0.90[EUR][1000 genomes]
rs72669349	0.90[EUR][1000 genomes]
rs72669351	0.90[EUR][1000 genomes]
rs72669354	0.87[EUR][1000 genomes]
rs72669356	0.87[EUR][1000 genomes]
rs73288580	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7844885	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7844974	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	esv3496086	chr8:104014069-104014645	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
3	esv3496084	chr8:104014081-104014609	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
4	esv3496087	chr8:104014106-104014681	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
5	esv3496083	chr8:104014119-104014598	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs72667301	ATP6V1C1	cis	Whole Blood	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104012800-104014600	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr8:104013400-104017400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:104013600-104015000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
4	chr8:104014000-104015200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links