Variant report
| Variant | rs7844974 |
|---|---|
| Chromosome Location | chr8:104022579-104022580 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:104020093..104022947-chr8:104025466..104027135,2 | MCF-7 | breast: | |
| 2 | chr8:103874740..103877471-chr8:104021496..104024859,5 | MCF-7 | breast: | |
| 3 | chr8:104020466..104022864-chr8:104026887..104029363,2 | K562 | blood: | |
| 4 | chr8:104016837..104018917-chr8:104021817..104023587,2 | MCF-7 | breast: | |
| 5 | chr8:103874077..103878132-chr8:104021810..104024681,6 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000155096 | Chromatin interaction |
| ENSG00000253663 | Chromatin interaction |
| ENSG00000253320 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs1512351 | 0.93[EUR][1000 genomes] |
| rs17199777 | 0.96[EUR][1000 genomes] |
| rs17200931 | 0.93[EUR][1000 genomes] |
| rs3808549 | 0.93[EUR][1000 genomes] |
| rs3808551 | 0.94[EUR][1000 genomes] |
| rs55635754 | 0.93[EUR][1000 genomes] |
| rs55649874 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55844983 | 0.93[EUR][1000 genomes] |
| rs56224531 | 0.93[EUR][1000 genomes] |
| rs56370378 | 0.93[EUR][1000 genomes] |
| rs57059899 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57205128 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71292768 | 0.83[ASN][1000 genomes] |
| rs72667277 | 0.90[EUR][1000 genomes] |
| rs72667278 | 0.93[EUR][1000 genomes] |
| rs72667279 | 0.93[EUR][1000 genomes] |
| rs72667281 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72667282 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72667289 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72667290 | 0.93[EUR][1000 genomes] |
| rs72667292 | 0.93[EUR][1000 genomes] |
| rs72667301 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72669305 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72669319 | 0.96[EUR][1000 genomes] |
| rs72669327 | 0.96[EUR][1000 genomes] |
| rs72669334 | 0.93[EUR][1000 genomes] |
| rs72669337 | 0.90[EUR][1000 genomes] |
| rs72669342 | 0.93[EUR][1000 genomes] |
| rs72669349 | 0.93[EUR][1000 genomes] |
| rs72669351 | 0.93[EUR][1000 genomes] |
| rs72669354 | 0.90[EUR][1000 genomes] |
| rs72669356 | 0.90[EUR][1000 genomes] |
| rs73288580 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7844885 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv33118 | chr8:103358567-104068172 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 145 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7844974 | KB-1507C5.4 | cis | Nerve Tibial | GTEx |
| rs7844974 | ATP6V1C1 | cis | Whole Blood | GTEx |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:104018000-104022800 | Weak transcription | Pancreas | Pancrea |
| 2 | chr8:104021600-104023200 | Enhancers | K562 | blood |
