Variant report

Variant	rs7844885
Chromosome Location	chr8:104022233-104022234
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:104020093..104022947-chr8:104025466..104027135,2	MCF-7	breast:
2	chr8:103874740..103877471-chr8:104021496..104024859,5	MCF-7	breast:
3	chr8:104020466..104022864-chr8:104026887..104029363,2	K562	blood:
4	chr8:104016837..104018917-chr8:104021817..104023587,2	MCF-7	breast:
5	chr8:103874077..103878132-chr8:104021810..104024681,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253320	Chromatin interaction
ENSG00000253663	Chromatin interaction
ENSG00000155096	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1398270	0.88[MEX][hapmap]
rs1398271	0.88[MEX][hapmap]
rs1512351	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs17199777	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17200931	1.00[CEU][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs2453997	0.88[MEX][hapmap]
rs3808549	0.93[CEU][hapmap];0.94[GIH][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs3808551	1.00[CEU][hapmap];0.85[CHD][hapmap];0.94[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs55635754	0.90[EUR][1000 genomes]
rs55649874	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55844983	0.90[EUR][1000 genomes]
rs56224531	0.90[EUR][1000 genomes]
rs56370378	0.90[EUR][1000 genomes]
rs57059899	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57205128	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71292768	0.83[ASN][1000 genomes]
rs72667277	0.87[EUR][1000 genomes]
rs72667278	0.90[EUR][1000 genomes]
rs72667279	0.90[EUR][1000 genomes]
rs72667281	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72667282	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72667289	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72667290	0.90[EUR][1000 genomes]
rs72667292	0.90[EUR][1000 genomes]
rs72667301	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669305	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669319	0.93[EUR][1000 genomes]
rs72669327	0.93[EUR][1000 genomes]
rs72669334	0.90[EUR][1000 genomes]
rs72669337	0.87[EUR][1000 genomes]
rs72669342	0.90[EUR][1000 genomes]
rs72669349	0.90[EUR][1000 genomes]
rs72669351	0.90[EUR][1000 genomes]
rs72669354	0.87[EUR][1000 genomes]
rs72669356	0.87[EUR][1000 genomes]
rs73288580	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7844974	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9693082	0.81[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7844885	OXR1	cis	parietal	SCAN
rs7844885	FBXO43	cis	cerebellum	SCAN
rs7844885	KB-1507C5.4	cis	Nerve Tibial	GTEx
rs7844885	ATP6V1C1	cis	Whole Blood	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104018000-104022800	Weak transcription	Pancreas	Pancrea
2	chr8:104021600-104023200	Enhancers	K562	blood

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