Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10518560	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1395976	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28428490	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28581332	0.88[EUR][1000 genomes]
rs28605421	0.93[ASN][1000 genomes]
rs4864324	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55907609	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56354110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs66516628	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66528219	0.88[EUR][1000 genomes]
rs66920142	0.88[EUR][1000 genomes]
rs67137307	0.88[EUR][1000 genomes]
rs67499622	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67696760	0.88[EUR][1000 genomes]
rs67868780	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67992570	0.88[EUR][1000 genomes]
rs68036106	0.88[EUR][1000 genomes]
rs6827509	0.93[ASN][1000 genomes]
rs72678118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72678137	0.88[EUR][1000 genomes]
rs72678144	0.88[EUR][1000 genomes]
rs72930950	0.93[ASN][1000 genomes]
rs7670930	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019516	chr4:130754819-130976202	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1017270	chr4:130853337-130982586	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv879936	chr4:130941492-130981535	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130952600-130965000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:130954600-130960600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:130954800-130966000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:130954800-130966200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:130954800-130966600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:130959800-130966600	Weak transcription	H1 Cell Line	embryonic stem cell

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