Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10518560	1.00[EUR][1000 genomes]
rs1395976	0.88[EUR][1000 genomes]
rs28428490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28581332	1.00[EUR][1000 genomes]
rs55907609	1.00[EUR][1000 genomes]
rs56354110	0.86[AMR][1000 genomes]
rs61464540	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66516628	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66528219	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66920142	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67137307	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67312336	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67499622	0.88[EUR][1000 genomes]
rs67696760	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67814075	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67868780	0.88[EUR][1000 genomes]
rs67992570	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68036106	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68081878	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72678114	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72678118	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72678137	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72678144	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72678151	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72926834	0.86[AFR][1000 genomes]
rs72926848	0.86[AFR][1000 genomes]
rs72936630	1.00[ASN][1000 genomes]
rs7670930	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027281	chr4:130962945-131005768	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1027051	chr4:130962945-131010834	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1019114	chr4:130962945-131013140	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv595414	chr4:130983055-131024471	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv595415	chr4:130983605-131046911	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv595416	chr4:130998472-131834405	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv2762461	chr4:131004382-131391658	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130999800-131007000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:131005200-131009800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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