Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10518560	0.89[EUR][1000 genomes]
rs28428490	0.89[EUR][1000 genomes]
rs28581332	0.89[EUR][1000 genomes]
rs4864324	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55907609	0.89[EUR][1000 genomes]
rs61464540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66516628	0.89[EUR][1000 genomes]
rs66528219	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66920142	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67137307	0.89[EUR][1000 genomes]
rs67696760	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67814075	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67992570	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68036106	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68081878	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72678118	0.89[EUR][1000 genomes]
rs72678137	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72678144	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72678151	1.00[ASN][1000 genomes]
rs72936630	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7670930	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv595415	chr4:130983605-131046911	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv595416	chr4:130998472-131834405	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2762461	chr4:131004382-131391658	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1025539	chr4:131033276-131728033	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv537253	chr4:131033276-131728033	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:131032800-131052200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:131036000-131046800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:131044800-131047000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr4:131044800-131047200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:131045000-131056600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:131046600-131046800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:131046600-131047200	Enhancers	HUES64 Cell Line	embryonic stem cell

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