Variant report
| Variant | rs61464540 |
|---|---|
| Chromosome Location | chr4:131055658-131055659 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10518560 | 0.89[EUR][1000 genomes] |
| rs28428490 | 0.89[EUR][1000 genomes] |
| rs28581332 | 0.89[EUR][1000 genomes] |
| rs4864324 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55907609 | 0.89[EUR][1000 genomes] |
| rs56932934 | 0.91[AFR][1000 genomes] |
| rs66516628 | 1.00[AFR][1000 genomes];0.89[EUR][1000 genomes] |
| rs66528219 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs66920142 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67137307 | 0.89[EUR][1000 genomes] |
| rs67312336 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67696760 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67814075 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67992570 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs68036106 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs68081878 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72678118 | 0.89[EUR][1000 genomes] |
| rs72678137 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72678144 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72678151 | 1.00[ASN][1000 genomes] |
| rs72928857 | 0.91[AFR][1000 genomes] |
| rs72936630 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7670930 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv595416 | chr4:130998472-131834405 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | esv2762461 | chr4:131004382-131391658 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1025539 | chr4:131033276-131728033 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv537253 | chr4:131033276-131728033 | Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:131045000-131056600 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
