Variant report

Variant	rs55907609
Chromosome Location	chr4:130973135-130973136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10518560	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1395976	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28428490	1.00[EUR][1000 genomes]
rs28581332	1.00[EUR][1000 genomes]
rs28605421	0.90[ASN][1000 genomes]
rs4864324	1.00[EUR][1000 genomes]
rs61464540	0.89[EUR][1000 genomes]
rs66516628	1.00[EUR][1000 genomes]
rs66528219	1.00[EUR][1000 genomes]
rs66920142	1.00[EUR][1000 genomes]
rs67137307	1.00[EUR][1000 genomes]
rs67312336	0.89[EUR][1000 genomes]
rs67499622	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67696760	1.00[EUR][1000 genomes]
rs67814075	0.89[EUR][1000 genomes]
rs67868780	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67992570	1.00[EUR][1000 genomes]
rs68036106	1.00[EUR][1000 genomes]
rs68081878	0.89[EUR][1000 genomes]
rs6827509	0.90[ASN][1000 genomes]
rs72678114	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72678118	1.00[EUR][1000 genomes]
rs72678137	1.00[EUR][1000 genomes]
rs72678144	1.00[EUR][1000 genomes]
rs72678151	0.87[EUR][1000 genomes]
rs72930950	0.90[ASN][1000 genomes]
rs7670930	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019516	chr4:130754819-130976202	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1017270	chr4:130853337-130982586	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv879936	chr4:130941492-130981535	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	nsv595412	chr4:130962263-131001046	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv461640	chr4:130962263-131003605	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv595413	chr4:130962263-131003605	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1027281	chr4:130962945-131005768	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1027051	chr4:130962945-131010834	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1019114	chr4:130962945-131013140	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv1027197	chr4:130965914-130998219	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv1028045	chr4:130965914-131004697	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130966800-130973200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:130973000-130973600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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