Variant report

Variant	rs72700842
Chromosome Location	chr4:171805995-171805996
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs72698875	0.87[EUR][1000 genomes]
rs72698878	0.87[EUR][1000 genomes]
rs72698881	0.87[EUR][1000 genomes]
rs72700821	0.87[EUR][1000 genomes]
rs72700825	0.87[EUR][1000 genomes]
rs72700830	0.87[EUR][1000 genomes]
rs72700833	0.87[EUR][1000 genomes]
rs72700834	0.87[EUR][1000 genomes]
rs72700839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700840	0.87[EUR][1000 genomes]
rs72700843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700847	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700850	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72702533	0.87[EUR][1000 genomes]
rs72702562	0.87[EUR][1000 genomes]
rs72704647	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881345	chr4:171673765-172228547	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv881415	chr4:171694739-171842726	Active TSS ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv881334	chr4:171713039-171842726	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171793600-171809200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:171805000-171806600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:171805000-171807400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr4:171805400-171806600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:171805600-171806600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr4:171805600-171806600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:171805600-171807000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr4:171805800-171806800	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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